RnoEX6029283 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107265250-107267723:+
Coord C1 exon
chr6:107265250-107265388
Coord A exon
chr6:107266554-107267007
Coord C2 exon
chr6:107267586-107267723
Length
454 bp
Sequences
Splice sites
3' ss Seq
GTTCCATCCCCAACCCACAGCCT
3' ss Score
6.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACCCCAAGATCCACCAATCTCAGGCCCATCCAAGCGAGATCAGCGAGTGTCGAAGCTCTCAGTTTGGCTGTTGCTATGACAATGTGGCTTTTGCAGCTGGTCCTCTGGGGGAAGGCTGTGTGGGTCAGCCCAGCTATG
Seq A exon
CCTACCCAGTGCGGTGTCTGCTGCCCAGTGCTCAAGGTTCGTGTGGAGACTGGGCTGCCCGTTGGTACTTTGTGGGATCAGTGGGCCGGTGCAACCGCTTTTGGTATGGCGGTTGCCACGGGAACGCCAATAACTTTGCTACGGAGCAGGAATGCATGGACACCTGCCGGGGGCAGCATGGGCCCCGCCGCCCTGAGGCAGGAGCAGCTGGACATCGTGTCCACATGGATGGTGGTCAACGTGGTCCCGGAGGCCAGCAGGAACCTGATTGGCACAGGATAGAAGCCACAGTCCCGAGACTGCCCTCACCTTCTGGAAGCCCTTGGTCGAGAGAACAAGAGCCTGGACCCGGGCAGGCGCCACACATCCCAGCCCAGGGGAAACGGCCCAGAGTCCCTGGACTGGATAGAGATGCTAGGCCACCAGTGCGGCCTACGCACAGCCCCTCCTACAG
Seq C2 exon
GATCAACTTGGCAGACTCGGAACCGTCCCTGGTACAGGCAGCTCCAGGGCAGGCGGTCCAACTCTTTTGCCCTGGCAACATCCCCCCGGAATTCCAGGCAGGGTGGCAGAAAGAGGGCCGGCCCATCTCCTCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.678 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0001418=Kunitz_BPTI=WD(100=34.9)
C2:
PF0767911=I-set=PU(50.6=89.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCACCAATCTCAGGCCC
R:
CTGTTAGAGGAGATGGGCCGG
Band lengths:
270-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]