RnoEX6030727 @ rn6
Exon Skipping
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14162194-14166334:-
Coord C1 exon
chr7:14166216-14166334
Coord A exon
chr7:14165352-14165917
Coord C2 exon
chr7:14162194-14162526
Length
566 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCACCCCACCATTAGCCA
3' ss Score
4.17
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGCCTCGATGTCAGACTGCTCTGTTCCCCTGTGAGTCCCAACCGTGTCAGCATGGAGGCCAGTGCCGTCCCAGCCTAGGCCGTGGAGGTGGGCTGACCTTCACCTGTCACTGTGTCCAG
Seq A exon
CCATTCTGGGGTCTGCGTTGCGAGCGGGTGGCACGCTCCTGCCGGGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGGCCGCGCTGTGCTTGTCCTCCCGGGCTGTCTGGGCCCTCCTGCCGGGTTTCTAGGGCGTCACCCTCTGGAGCTACTAACACCAGCTGCGCTGCTACTCCTTGTCTGCATGGGGGCTCCTGCCTACCTGTACAGAGTGTCCCTTTCTTCCGCTGTGTATGCGCTCCGGGCTGGGGTGGCCCGCGTTGCGAGACCCCTTCCGCAGCCCCTGAGGTCCCTGAGGAGCCACGGTGCCCGCGAGCCGCCTGTCAGGCCAAGCGAGGGGACCAGAACTGCGACCGTGAGTGCAACAGCCCAGGCTGTGGCTGGGACGGCGGTGACTGCTCGCTGAATGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGCGATCCAGCCTGCAGCTCTCCTGCCTGCCTCTATGACAACTTTGACTGCTACTCTGGTGGCCGCGACCGCACCTGCAA
Seq C2 exon
CCCGGTTTATAAGAAGTACTGCGCCGACCACTTTGCAGATGGCCGTTGTGACCAGGGCTGTAACACCGAGGAGTGTGGCTGGGATGGGCTGGACTGTGCCAGTGAGGTCCCGGCCCTTTTGGCCCGGGGGGTTCTGGTCCTCACAGTTCTTCTGCCTCCTGAAGAGTTGCTTCGCTCTAGTGCCGACTTCCTGCAGCGACTCAGCGCTATTCTGCGCACCTCGCTGCGCTTCCGCCTGGATGCACGTGGCCAAGCCATGGTCTTTCCCTACCACCGGCCAAGTCCTGGCTCCGAATCCCGGGTTCGTCGTGAGCTTGGCCCAGAGGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=7.5),PF0000822=EGF=PU(80.6=72.5)
A:
PF0000822=EGF=PD(13.9=2.6),PF0000822=EGF=WD(100=17.5),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=PU(12.8=2.6)
C2:
PF0006612=Notch=PD(84.6=29.5),PF068168=NOD=WD(100=50.9),PF076847=NODP=PU(4.6=2.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAACCGTGTCAGCATG
R:
TGGTAGGGAAAGACCATGGCT
Band lengths:
358-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]