RnoEX6030735 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14226002-14229354:-
Coord C1 exon
chr7:14228764-14229354
Coord A exon
chr7:14226264-14226376
Coord C2 exon
chr7:14226002-14226164
Length
113 bp
Sequences
Splice sites
3' ss Seq
GATCTTGTCTGATCTCCTAGGTC
3' ss Score
8.64
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCCTGCCTTGGCCCAGCCCCCCCTGCTCCCACAGCCACCTATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCGCCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCACCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAACAGCAGCTCCAGCAGCAGCCACCACCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCCCCACCACGACCAGTTCACTTGCCATCCATGCCCTTCTCTGCTCACATTCAGCAGCCCCCACCACCCACAGGACAGCAACCCACCCACCCACCCCCAGGACAGCAGCCACCCCCACCACAGCCTGCCAAGCCTCAGCAAGTCATCCAGCATCACCCTTCACCCCGGCACCACAAGTCAGACCCCTACTCAGCTG
Seq A exon
GTCATCTTCGTGAAGCCCCTTCTCCGCTTATGATACATTCCCCTCAAATGCCACAGTTCCAGAGCCTGACCCATCAGTCTCCACCCCAGCAAAACGTCCAGCCCAAGAAGCAG
Seq C2 exon
GAGCTGCGCCCACCGTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTGAAGGAGGAGAAGATTCACTCACCAATCATCCGCAGTGAGCCTTTTAGCACCTCACTTCGCCCAGAGCCGCCCAAGCACCCAGAGAACATGAAGGCCCCAGTCCACCTGCCTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'30-37,'30-35,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGCCCTTCTCTGCTC
R:
ACTGCGGATGATTGGTGAGTG
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]