BtaEX6037274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8901965-8904806:+
Coord C1 exon
chr7:8901965-8902262
Coord A exon
chr7:8904433-8904545
Coord C2 exon
chr7:8904644-8904806
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTTCCTTCTCTTAGGTC
3' ss Score
11.24
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCGCCTCCCCATCCCTCCGTGCAGCAGCTGCAGCAGCAGCAGCAGCAGCCGCCACCCCCACCCCCACCCCAACCCCAGCCCCCACCCCAGCAGCAGCACCAGCCCCCCCCACGGCCTGTGCACATGCAGCCCATGCAGTTCCCCGCTCACATCCAGCAGCCCCCGCCGCCCCCTGGCCAGCAGCCACCCCACCCACCCACAGGCCAGCAGCCACCCCCGCCGCAGCCTGCCAAGCCTCAACAAGTCATCCAGCACCACCCTTCACCCCGGCACCACAAGTCAGACCCCTACTCCACTG
Seq A exon
GTCACCTCCGTGAAGCCCCCTCCCCGCTTATGATACATTCCCCCCAGATACCACAGTTCCAGAGCCTGACCCACCAGTCGCCACCCCAGCAAAATGTCCAGCCTAAGAAGCAG
Seq C2 exon
GAGCTCCGAGCGGCCTCTGTGGTCCAGCCCCAGCCTCTGGTGGTGGTGAAGGAGGAGAAGATCCACTCACCCATCATCCGCAGTGAGCCTTTCAGCCCCTCACTGCGGCCGGAGCCCCCCAAGCACCCGGAGAGCATCAAGGCCCCTGTCCACTTGCCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'20-32,'20-30,22-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCCGCTCACATCCAG
R:
AAAGGCTCACTGCGGATGATG
Band lengths:
254-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]