RnoEX6030736 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14225777-14226376:-
Coord C1 exon
chr7:14226264-14226376
Coord A exon
chr7:14226002-14226164
Coord C2 exon
chr7:14225777-14225907
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCGTACCTATGCTGTCCCAGGAG
3' ss Score
5.93
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTCATCTTCGTGAAGCCCCTTCTCCGCTTATGATACATTCCCCTCAAATGCCACAGTTCCAGAGCCTGACCCATCAGTCTCCACCCCAGCAAAACGTCCAGCCCAAGAAGCAG
Seq A exon
GAGCTGCGCCCACCGTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTGAAGGAGGAGAAGATTCACTCACCAATCATCCGCAGTGAGCCTTTTAGCACCTCACTTCGCCCAGAGCCGCCCAAGCACCCAGAGAACATGAAGGCCCCAGTCCACCTGCCTCAGC
Seq C2 exon
GGCCTGAGATGAAGCCTGTAGATGTAGGGAGGCCTGTGATCCGGCCTCCAGAGCAGAGTGCACCCCCACCAGGGGCCCCTGACAAGGACAAACAGAAACAGGAGCCAAAAACACCAGTGGCGCCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'31-39,'31-37,32-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCTTCGTGAAGCCCCTT
R:
CTTTTTGGGCGCCACTGGT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]