DreEX6018998 @ danRer10
Exon Skipping
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52959636-52961114:+
Coord C1 exon
chr3:52959636-52959730
Coord A exon
chr3:52959821-52959977
Coord C2 exon
chr3:52960978-52961114
Length
157 bp
Sequences
Splice sites
3' ss Seq
GAGCTGTTGCTTTGCTACAGGAA
3' ss Score
7.69
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CACACCTGCGAGATAACCCCTCCCCGCTCATGATGCATTCCCCTCAGATCCCCCAGTATTCTTTAGTCCACCAGTCCCCCTCTCAGGACAAAAAG
Seq A exon
GAACCACAGCGAGGTCCTTCAGCTTTGGGTGGCATTAAAGAAGAAAAGCTGCCCCCGTCACCTGTGATGCGCGGTGAGCCCTTCAGTCCGGCCATGAGACCAGAGTCTCATAAACATCCCGACAGCAAACCTACAATGCCGGGCCACAGCCAACAGA
Seq C2 exon
GAGCAGATATGAAACCACTTGAAATGTCCCGTCCTGTGATCCGCTCGTCTGAACAGAGCGGCCCGCCTCCTTCCATGCAGGACAAAGAGAAGTTTAAACAGGAGCCCAAGACGCCCTCGGCTCCTAAAAAGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCGAGATAACCCCTC
R:
GTACCTTTTTAGGAGCCGAGGG
Band lengths:
229-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]