BtaEX6037273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8904433-8905073:+
Coord C1 exon
chr7:8904433-8904545
Coord A exon
chr7:8904644-8904806
Coord C2 exon
chr7:8904943-8905073
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCATGCCTGTGCTGTCCCAGGAG
3' ss Score
6.72
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTCACCTCCGTGAAGCCCCCTCCCCGCTTATGATACATTCCCCCCAGATACCACAGTTCCAGAGCCTGACCCACCAGTCGCCACCCCAGCAAAATGTCCAGCCTAAGAAGCAG
Seq A exon
GAGCTCCGAGCGGCCTCTGTGGTCCAGCCCCAGCCTCTGGTGGTGGTGAAGGAGGAGAAGATCCACTCACCCATCATCCGCAGTGAGCCTTTCAGCCCCTCACTGCGGCCGGAGCCCCCCAAGCACCCGGAGAGCATCAAGGCCCCTGTCCACTTGCCCCAGC
Seq C2 exon
GGCCTGAGATGAAGCCTGTGGATGTCGGGAGGCCTGTCATTCGGCCCCCTGAGCAGAATGCACCCCCACCAGGGGCCCCAGACAAGGACAAACAGAAACAGGAGCCGAAGACGCCAGTTGCACCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'22-33,'22-32,23-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCCGTGAAGCCCC
R:
CTTTTTGGGTGCAACTGGC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]