RnoEX6033669 @ rn6
Exon Skipping
Gene
ENSRNOG00000054624 | AC096792.1
Description
NA
Coordinates
chr7:133116520-133117817:+
Coord C1 exon
chr7:133116520-133116546
Coord A exon
chr7:133117474-133117515
Coord C2 exon
chr7:133117809-133117817
Length
42 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTGTTCCTACACAGTTT
3' ss Score
7.52
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAACTCCTACGAACTCAACATCAGCAG
Seq A exon
TTTCTCTGGCTCCAACTACTTCCGTATTAAGTACATCGGCAG
Seq C2 exon
CCATGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054624-'28-29,'28-28,29-29=AN
Average complexity
A_C3
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]