HsaEX6065945 @ hg19
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:14362]
Coordinates
chr12:40841968-40844095:+
Coord C1 exon
chr12:40841968-40841997
Coord A exon
chr12:40843491-40843532
Coord C2 exon
chr12:40844063-40844095
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATATTGTGTTTCCTAAACAGTTT
3' ss Score
8.65
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAACTGCTCCTACCAATTCAACATTTGCAG
Seq A exon
TTTCCACTACAACAGCTACCACCATATTAAGCACCGGAGCAG
Seq C2 exon
CAATTACACTGGTTACCGGTGGCCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTCCTACCAATTCAACA
R:
GTGCTTGGGCCACCGGTAA
Band lengths:
60-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)