HsaEX6065945 @ hg38
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40448166-40450293:+
Coord C1 exon
chr12:40448166-40448195
Coord A exon
chr12:40449689-40449730
Coord C2 exon
chr12:40450261-40450293
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATATTGTGTTTCCTAAACAGTTT
3' ss Score
8.65
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAACTGCTCCTACCAATTCAACATTTGCAG
Seq A exon
TTTCCACTACAACAGCTACCACCATATTAAGCACCGGAGCAG
Seq C2 exon
CAATTACACTGGTTACCGGTGGCCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTCCTACCAATTCAACA
R:
GTGCTTGGGCCACCGGTAA
Band lengths:
60-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains