MmuEX6055888 @ mm9
Exon Skipping
Gene
ENSMUSG00000044021 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91732027-91733595:+
Coord C1 exon
chr15:91732027-91732074
Coord A exon
chr15:91733033-91733074
Coord C2 exon
chr15:91733566-91733595
Length
42 bp
Sequences
Splice sites
3' ss Seq
AATCCTATGTTCCCCCACAGTCT
3' ss Score
8.5
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAACTCCTCCAAATTCAACAACAACAACAACAGCAACAACAGCAGCAG
Seq A exon
TCTCTACGGCCACAACTACTTCCGTATTAAGCACATCAGCAG
Seq C2 exon
CAGCGACAAGGGCCAGCAGCTCGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044021-'30-30,'30-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCCAAATTCAACAACAACA
R:
CTGAGGTCGAGCTGCTGG
Band lengths:
76-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: