MmuEX6055888 @ mm10
Exon Skipping
Gene
ENSMUSG00000044021 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91901596-91924663:+
Coord C1 exon
chr15:91901596-91901643
Coord A exon
chr15:91902602-91902643
Coord C2 exon
chr15:91924610-91924663
Length
42 bp
Sequences
Splice sites
3' ss Seq
AATCCTATGTTCCCCCACAGTCT
3' ss Score
8.5
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAACTCCTCCAAATTCAACAACAACAACAACAGCAACAACAGCAGCAG
Seq A exon
TCTCTACGGCCACAACTACTTCCGTATTAAGCACATCAGCAG
Seq C2 exon
CTTCCACCTCGGTAGCACCTGGAGTCACAACCAGCCCCAACATATCTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044021-'31-50,'31-39,32-50=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCCAAATTCAACAACAACA
R:
CTGGCTGAGATATGTTGGGGC
Band lengths:
100-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types