RnoEX6034717 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21481642-21490337:-
Coord C1 exon
chr8:21490255-21490337
Coord A exon
chr8:21489256-21489382
Coord C2 exon
chr8:21481642-21481722
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGTCTGCAATATTTCAGGAG
3' ss Score
6.06
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTCCTTCAGGGGACTCAGTCTGCCTTCAGGAAGAAAAAGTATCAGCCGAAATGATGTTGGTTGATTGCCTGACAAATTATCAG
Seq A exon
GAGTTAGTGAGCTTTGATGATGTGATTGTGGACTTTACCCAAGAGGAGTGGACCTCACTGAACCCAGATCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACAAGAACCTGGCCACAGTAG
Seq C2 exon
GATATCAGCTCATCAAACCCAGTGTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTACAGGGCAGAAGATAGTTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624-'7-7,'7-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAGGGGACTCAGTCTG
R:
TGGAAAAACTATCTTCTGCCCTGT
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]