HsaEX0074345 @ hg38
Exon Skipping
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89222092-89224802:+
Coord C1 exon
chr16:89222092-89222141
Coord A exon
chr16:89223157-89223283
Coord C2 exon
chr16:89224719-89224802
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGTCATGTGTGATGATTTAGGAC
3' ss Score
6.88
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGGTCATGTTTCTAGGGACTCAGTCTGCCTTCATGAAGAACAGACACAG
Seq A exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
Seq C2 exon
GACATCACCTGTTCCAACCCAGTGTGATCTATTGGCTGGAGCAGGAAGAGGAGTTGAGGGCAGGGCGGAGAGCAGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100_MULTIEX1-2/7=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCATGTTTCTAGGGACTCA
R:
GAGAACTGCTCTCCGCCCT
Band lengths:
130-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development