HsaINT0188366 @ hg38
Intron Retention
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89223157-89225631:+
Coord C1 exon
chr16:89223157-89223283
Coord A exon
chr16:89223284-89225554
Coord C2 exon
chr16:89225555-89225631
Length
2271 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TCATTCTTCTTTCTTTTCAGAAT
3' ss Score
12.09
Exon sequences
Seq C1 exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
Seq A exon
GTGAGGCTGCCACCGTCCTTTGCAACTTCTGTGGAACCAATACTTGATGTGTCCTTACTGTGTTCCAGGGTTGGTGACGGCAAAGCCGAGTACCACGGGAAGTAAGAGATATAACAACTGTGCTAGTAGGCTTGGTGCTAGTGTGGTCGTTTCCAGAATGTGGTCCTGGGGTCATGAGCATCACCGTCACTCCTCTAGAAACATGCATTCTGAGGCTTCAGCTGGGACACATTGGATCAGAATGTCTCCTGGGGGTGGGCCTGTCATCTCTCCTGTAACAAGCCCTCCCGACGATGCCAATTCACTCTAACACTGAGAACCACTGGGTAGTAGTTTCCCAAGTGAATGAAGATCTCTTATTGCACTTCTGTTATTTCCTATTTGAGTAAGAGTCTTTGTGGTTTTTACGTGTATATTTAAGCCTGAATGTGGGCTTCAGGAATCAGAGATAACCAGTTTCTTTGGGGCGCAGAAGGATGGAGTATTTGCACTTTGAGCCCTTTTGAAACAATTTCACTGCATTCTTTAGAAATGTAGTTCCTGGCATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAACAAACGTAGTTCCTGGCCGGGCGCGGTGGCTCATGCCTGTAATCCGAGCACTCTGGGAGGCTGGGTGCAGTGGCTCAGGGCTGTAATCCCAGCACTCTGGGAGGCCGGGCGCGGTGGCTCAGGGCTGTAATCCCAGCACTCTGGGAGGCCAGGCGCAGTGGCTTAGGGCTGTAATCCGAGCACTCTGGGAGGCTGGGTGCAGTGGCTCAGGGCTGTAATCCGAGCACTCTGGGAGGCTGGGTGCAGTGGCTCAGGGCTGTAATCCCAGCACTCTAGGAGGCCAGGCGCAGTGGCTCAGGGCTGTAATCCCAGCACTCTGGGAGGCAGGGTGTGGTGGCCACGCCTGTAATCCCAGCACTCTGGGATGCTGGACGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCGAGCACTCTGGGACGCCAGACGCAGTGGCTCATGCCTGTAATCCTAGCACTTTTGAGAGGCCGGGGTGGGCGGATCACAAGGTCAGGAGATTGAGACCATTCTGACCAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAACTAGCCAGGCGTGGTGGCGGGCACCTATAGTCCCAGCTACTTAGGAGGCTGAGGCAAGAGAATCACTTGAACCCAGGAGGCAGACGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGCGCGAGACGCTGTCTCAAAAAATAATAAAAAAAAGGAAATGTAGTTCCTGTTCACGGGTAGGTTTGTCATCCCCTGCCTGAGCCTCTTCCATCGATGTCTCTTTCCCTGTGTACAGGACATCACCTGTTCCAACCCAGTGTGATCTATTGGCTGGAGCAGGAAGAGGAGTTGAGGGCAGGGCGGAGAGCAGTTCTCCAAGGTAAGTGTGAAGAGCACGCCTGGTCGATGTCAAGTTTAGCAGCTGTGGGAGGATCCTGAGTGTCAAGTTTAGCGGCTATGGAAGGATTGTGTCAAGTTAAGCGGCTGTGGGAGGATCCTGAGTGTCGAGTTTAGCGGCTGTGGAAGAATCCTGAGTGCACGTTTTAAGATGCATTCTGGCACAGAACATGAGGCTGTTGGCTCTGGGTATCCTGAGCTTCCCGTAATTCCTTATTTTCCATCTGATCTGGATTTTCCCTTTCTTGTGATCTCATAAAAAACCTGCTGTTTTGTTCTTTCAGTTTGTGGGTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAAACTCTGCCTCCTGGGTTCACTCAGTTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCGTGCTGCCACGCCTGGCCAAGTTTGTGTTTTGAATGTATGCCCTTTGTCCAGCTCTTTCCTGCTTTCTTTCATTGATAATATTGTTTCTGTTCACCTCACATTTCTTCTTTATGGACCAAATGTATTTTAAAATCTTCTAAATTATGACTCCCAGTTCCTATGATTCCAAATTTTACACATAGCCAAACTCCTTAAATCTATCTTTGCTTTGTTTTTTTTTCTGCCATGTCTTATATGAAAACAAATACCAATGAGTTTGATCGTTTTTAGGTCATTCTTCTTTCTTTTCAG
Seq C2 exon
AATGGCGACTTAAAACCAAAGGGCCAGCACTTCGGCAGGATAGATCTTGGTTCAGAGCATCAAATGAGACACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100:ENST00000620195:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains