HsaEX0074346 @ hg38
Exon Skipping
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89223157-89225631:+
Coord C1 exon
chr16:89223157-89223283
Coord A exon
chr16:89224719-89224802
Coord C2 exon
chr16:89225555-89225631
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTCCCTGTGTACAGGAC
3' ss Score
10.2
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
Seq A exon
GACATCACCTGTTCCAACCCAGTGTGATCTATTGGCTGGAGCAGGAAGAGGAGTTGAGGGCAGGGCGGAGAGCAGTTCTCCAAG
Seq C2 exon
AATGGCGACTTAAAACCAAAGGGCCAGCACTTCGGCAGGATAGATCTTGGTTCAGAGCATCAAATGAGACACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100_MULTIEX1-3/7=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTTTGACGACGTGG
R:
AGATCTATCCTGCCGAAGTGCT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development