HsaALTD1035179-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89223157-89224802:+
Coord C1 exon
chr16:89223157-89223279
Coord A exon
chr16:89223280-89223283
Coord C2 exon
chr16:89224719-89224802
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
GTCTCTTTCCCTGTGTACAGGAC
3' ss Score
10.2
Exon sequences
Seq C1 exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCA
Seq A exon
GTAG
Seq C2 exon
GACATCACCTGTTCCAACCCAGTGTGATCTATTGGCTGGAGCAGGAAGAGGAGTTGAGGGCAGGGCGGAGAGCAGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100-6-11,8-11,9-11-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCATCTCAGAGAGACC
R:
TCACACTGGGTTGGAACAGGT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains