HsaEX0074344 @ hg38
Exon Skipping
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:HGNC:26479]
Coordinates
chr16:89220997-89223283:+
Coord C1 exon
chr16:89220997-89221152
Coord A exon
chr16:89222092-89222141
Coord C2 exon
chr16:89223157-89223283
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCTTTGTTTTTTAGGAG
3' ss Score
11.26
5' ss Seq
CAGGCAGCA
5' ss Score
-1.38
Exon sequences
Seq C1 exon
GAAATAGGGATCCAGCCATCCGTGGGTCAGGAGGAATGGAGACTGTACCTTCCACATAGATTCACAAGCTGCCCTGCAGTGGCCTTGGCTTCAGGAAAGGAGCATTCAGACGCTTCCGTCAGCCTCCCAGGATGGCAGCCCCTGACCTGGCCCACG
Seq A exon
GAGGTCATGTTTCTAGGGACTCAGTCTGCCTTCATGAAGAACAGACACAG
Seq C2 exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100_MULTIEX1-1/7=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATTCACAAGCTGCCCTGC
R:
TTCCTCCTGGGTGAAGTCCAC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development