HsaEX0074344 @ hg19
Exon Skipping
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:26479]
Coordinates
chr16:89287405-89289691:+
Coord C1 exon
chr16:89287405-89287560
Coord A exon
chr16:89288500-89288591
Coord C2 exon
chr16:89289565-89289691
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCTTTGTTTTTTAGGAG
3' ss Score
11.26
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GAAATAGGGATCCAGCCATCCGTGGGTCAGGAGGAATGGAGACTGTACCTTCCACATAGATTCACAAGCTGCCCTGCAGTGGCCTTGGCTTCAGGAAAGGAGCATTCAGACGCTTCCGTCAGCCTCCCAGGATGGCAGCCCCTGACCTGGCCCACG
Seq A exon
GAGGTCATGTTTCTAGGGACTCAGTCTGCCTTCATGAAGAACAGACACAGGCAGCAGGGATGGTGGCTGGCTGGCTGATAAATTGTTACCAG
Seq C2 exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCAGGAGGAATGGAGAC
R:
TTCCTCCTGGGTGAAGTCCAC
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)