HsaEX0074345 @ hg19
Exon Skipping
Gene
ENSG00000170100 | ZNF778
Description
zinc finger protein 778 [Source:HGNC Symbol;Acc:26479]
Coordinates
chr16:89288500-89291210:+
Coord C1 exon
chr16:89288500-89288591
Coord A exon
chr16:89289565-89289691
Coord C2 exon
chr16:89291127-89291210
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGTCATGTGTGATGATTTAGGAC
3' ss Score
6.88
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGGTCATGTTTCTAGGGACTCAGTCTGCCTTCATGAAGAACAGACACAGGCAGCAGGGATGGTGGCTGGCTGGCTGATAAATTGTTACCAG
Seq A exon
GACGCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAG
Seq C2 exon
GACATCACCTGTTCCAACCCAGTGTGATCTATTGGCTGGAGCAGGAAGAGGAGTTGAGGGCAGGGCGGAGAGCAGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170100_MULTIEX1-2/6=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCATGTTTCTAGGGACTCAGT
R:
GAGAACTGCTCTCCGCCCT
Band lengths:
171-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)