RnoEX6034976 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23238627-23248642:-
Coord C1 exon
chr8:23248516-23248642
Coord A exon
chr8:23242296-23242388
Coord C2 exon
chr8:23238627-23238730
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTCATACTTACAGGGC
3' ss Score
10.07
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGTTGGTGTCATTCGAGGACGTAGCTGTGGACTTCACCTTGGAGGAGTGGCAGGACCTGAATGCTGCCCAGAGGACCCTGTACAGGGACGTGATGCTGGAGAACTACAGGAGCCTAGTGTTCCTGG
Seq A exon
GGCACTGTATGAACAAACCTGAGTTGATCTTCAAGTTGGAGCAAGGACTTGGGCCATGGAATGTAGCAGAAGCCTCGGGCAGGAGCCTCCCAG
Seq C2 exon
ATGTTCATGTATTGACTGAACCAATTGGGACCAGCCAGAAAAGTCACAAAGTGTGTGTGTGGCAAGGTAGAACCACCCAACACAAGGCATCGAGTGAAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.099 C2=0.300
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGCTGTGGACTTCACCT
R:
ACCTTGCCACACACACACTTT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]