MmuEX1028554 @ mm10
Exon Skipping
Gene
ENSMUSG00000062794 | Zfp599
Description
zinc finger protein 599 [Source:MGI Symbol;Acc:MGI:2679006]
Coordinates
chr9:22251528-22258171:-
Coord C1 exon
chr9:22258045-22258171
Coord A exon
chr9:22253855-22253947
Coord C2 exon
chr9:22251528-22251631
Length
93 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTTCATACTTACAGGGC
3' ss Score
9.66
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGCTGATATCATTTGAAGACGTAGCCGTGGACTTCACCTGGGAGGAATGGCAAGACCTGGACGCTGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACATCAGCCTGGTGTCCCTAG
Seq A exon
GGCACTGTATGAACAAACCTGAGTTAATCTTCAAGTTGGAGCAAGGACTCGGGCCATGGAGTGTCGCAGAAGCCTCAGACAGGAACCTCTCAG
Seq C2 exon
ATTTTCACATATTGACTGCACCAATTGTGACCAGCCAGAAAAATCACAAGGCATATATGTGGCAAGCTAGAACCACCGAAAATAAGGCATCAAATGAAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062794-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTTCACCTGGGAGGAA
R:
TTTCGGTGGTTCTAGCTTGCC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types