MmuINT0179524 @ mm10
Intron Retention
Gene
ENSMUSG00000062794 | Zfp599
Description
zinc finger protein 599 [Source:MGI Symbol;Acc:MGI:2679006]
Coordinates
chr9:22251528-22253947:-
Coord C1 exon
chr9:22253855-22253947
Coord A exon
chr9:22251632-22253854
Coord C2 exon
chr9:22251528-22251631
Length
2223 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CATTTTTATTCTAATTTTAGATT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GGCACTGTATGAACAAACCTGAGTTAATCTTCAAGTTGGAGCAAGGACTCGGGCCATGGAGTGTCGCAGAAGCCTCAGACAGGAACCTCTCAG
Seq A exon
GTCAGTGAGGACATGTTGGGCAAGGAAGGTCAGCAAGAAGAAAGTCCATCCACCATTGGTCATGTTGATCTTTTTCTACCGACTTTTATCTAAACCTACTCCTGATGAACAAGTTCCACTCCTAGAATAGACATTGACATGAATGAAGAGAGTGTTCATTATTAGCTTAGTAAATCAGAAAGCCTCTTAAGATGGAAGGAGACATTCCTGATTTTCAATAGCAGCCCTTAATGTAAATCATTTCAACTTGCCAATCAAGTCATACACAAAAGTGGTGGTTTGAATATGCTTGGCCCATGGTAAGTGGCACTGTTAAAAGATGTGGCCTTATTGGAGGAGGTGTAGCCTTATTAGCGGAAGTGTGTCACTGTCAGGAGTAGGTTTTGGGATCTCCTCCTATGTTCAAGATCTGCCCAGTACAGAGCCTGGGTGCATATGGATCAAGATGTAGAATTCTTGGCTTCTCCAGTACCATGTCTGCCTGGATTCTGCCATGCTTCCCACCATGATGATAATGGACTGAGCCTCTGAAACTGTAAGCCAGCCCCAATTAAATGGTTTCCTTTATAAGAGTTGCCATGATCATGGTGTCTCTTCACAGCAATGGAAATCTAAGACAATAAGCAAAAGCCATTTTGTGGTGGTACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGTTCCAGGGCAGCCAGGACTGCACAGAGAAACCACCCTGTCTTGAAAAACCAACAGGCTGGTGAGATGGCTCAGCTGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTACAACAACATGGTGGATCACAACTATCTGTAATGGGATCTGATGCCCTCTTCTCTGCTGTGTCTGAAGACAGCAACAGTGTACTCACATACATAAATTAATAAATAAAATCTTTAATTTAAAAGAAAAACCAAAAAAAAAAAAAAAGGACAACCAAACTAAATTCTTAGAAACATCTGATTTTGTTTACTTTTAGAAGAAATCTCACTAATGAAAACAGACCTTACAGATAGAAAGTGATGTTTGAAGCAAACTGTGAAAGAGATTAATATTAGGGTTTTTTTATAATAGTTGAAGCATATGAAAAACTGAAGTAAGTTTGTTTATTATGAAACTTTATGGGCTATTTCATGATAAAGAGATCTCAAATATAAATATATGTGCCCTGAACATTTGTTAACCAATGTTTTTAAAAATAACATGCCTCAAAGTGCCATCTTATGATAGTTAATGTCAGTATCCCACTCCTGAAAAGATAGACTACCCAGACAAATCCAAACTTAACAAGATTGAAACTCTGTTTCATGCTCAAAGTAGAGCATTTCCTTTAAAGTGAGCAATGATACAGTGTTCATTCTTTCTCTTCCTTCTCATTAATATAAAGTCTACAGTGAGAGGCGGTAAAAGCCTTTGATCTCAGCACTCTCGGTTTGAGGCTAGCCTCTTCTTTATAGCGAGTTTCAGGCCAGAAGCTCACAGACCAGCTAGCATTGCGGATGCATGCAGTACAGAGGAAATAAGGGGAACCCGCGCAACAGTGTCTTAAGTAATTTCTTATTAGTTTCTATTGCCTGAAGAGACACCATGAACACAGCAACTCTTACAAAGGAAAACATTTAGTTGGTGCTGGCTAACAGTTCAGAGGCTTAGTCCATTATCATGGCAGGAAGTGTGGCAGCATGCAGGTAGATGGTAGCATGCAGGTAGGCATGGTGCTGAAGAGGTAGGTAGCTGAGAACACAGATGTAGGAATCTTTCCTCAACATATATTCCAGCTTAGGAGCAAGAACATTCTCTATATATCTTAAAAGTAACTTTTCACATGTGAATAAGGGGTGTTATAGATGACATTGTATGTATAGTTAATATCCTAGAGAAATGGAGAAGCCAGGAAACAGCAGATGAAAATCACTGTTGAGTCCTACAGACGAAGGTGAGCAGCTTAGCTTACCCTGCACTTTACCAGAAGGCACGGCAGCACGACCATGACCCAGTGTGTCGTGTGATAGTCTCACTCGTTATACAAATCCATGAAGTTCCAGAATATTCACACTTATTATTTTACAACTTCCATGAGGAAAAAGAAGCCCAATTCATTTTAGAATCGCATTAAAAAGACTGGTGTGATTTGTAAATAAGGACATTTTTATTCTAATTTTAG
Seq C2 exon
ATTTTCACATATTGACTGCACCAATTGTGACCAGCCAGAAAAATCACAAGGCATATATGTGGCAAGCTAGAACCACCGAAAATAAGGCATCAAATGAAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062794:ENSMUST00000086281:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types