RnoINT0082235 @ rn6
Intron Retention
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23238627-23242388:-
Coord C1 exon
chr8:23242296-23242388
Coord A exon
chr8:23238731-23242295
Coord C2 exon
chr8:23238627-23238730
Length
3565 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CATTTTTATTCTAATTTTAGATG
3' ss Score
8.23
Exon sequences
Seq C1 exon
GGCACTGTATGAACAAACCTGAGTTGATCTTCAAGTTGGAGCAAGGACTTGGGCCATGGAATGTAGCAGAAGCCTCGGGCAGGAGCCTCCCAG
Seq A exon
GTCAGTGAAGGCAAGGAAGGTCGGCAGGAAGAAAGTTCATCCGCCATTGCCCATGTTGAGCTTTCTTTACCTACTTTTATCAAAACCCACTCCTGATGAATGAGTTCCACTCCTAGAATTAACACCGGCACAAAGAACATGTTCAATATTAGCTTAGTAAACCAGGAAGCCTCTAATGTGGAAGAAAACATTCCTGATTTCTAATAGCAGCCCTTAATGTAAGTAATTTCAACTTTCCAGTCAGGTCATACACAAATGTGGTGGTTTGAATATGGTTGGCCCATGATGTCACTATTAGAAGAGGTGGCCTTCCTGGAGGAGGTGTAACCTTGTTAGAGGAAGTGTGTCACTGTTGGGGAGGGTTTTGGGATCCCCTCCTATGGCTCATGTTCTGCCCAGTGCAGAAGAGAGCCTCCTGTTGGCGGCCTACAGATCAAGATATAAAACTCTTGGCTTCTCCAGCACCATGTCTGCTTGGATGCTGTCATGCTCCCCACCATGATGATAATGGACTGAGCCTCTGAAACATTAGGTTTTCTTATAATAATAATTGAAGCATATGAAAAGCTGAAGTAAGTTTGTTTGTTATGAAACTATGAGCTATATCATGGCGAGATCTCAGATGTAAATATATATATACCCTGAAGATTTGTGAACCAATGTTTTTAAAAAATAACACTCCTCTCAAAGTGCCAATTTACGTTAATTCAGTATTCCACTCCTGAATAATAAACTACGCTGACAAGGCCAGAAGTAACAAGATTGAAACTATGTTTCGTGCTCAAAGAAGAGTATCTGCTTTAATGGGAGCAGCGATACAGTGTTCATTCTTTCTCTTCTTTCCTTTAAAATAAAGTTTAAAGTGAGAGTGGTGGTAAATGCCTTTAACCTCAGCACTCTGAATTTGAGGCTGGTTTCCTCTCCACAGTGAGTTTCCGGTCAGTAAAAACTGCCCAGAAGCTCATGGACCAGTACAGCGGGAATAAGGAGAAACTGCTCAACGGTGGCTTAATTAGTTTCTTATTAGTTTCTATTGCTTGAAGAGATGCCATGAACACATCAACTCTTACTGTAGAGGAAAACATTTAGTTGGTACTGCCTAACAGTTCAGCGGTTTCATCCATCATCATGGCGGGAAGCACGGTAGTACACGGTACCTGCAGGTCGACAGGGTGCTGGAGAGCCAGGCAACTGAGAACTCTACACATGGATTTGCACCAGGGACAGAGTGCCACACTAGGCCTAGCATGAGCATCTGAGACCTCAAACCCTGCCCCAGTGACACACTTCCTATAAGAATGTCACACCTACTCCAACAAAGCTACACCTCCCGATGGGTCTATTGGGGACATTTCCTTTAAACCACCACAGTGGTAGGAAAAGACGCATTACCTAGGAATGGCAAAGCCCTGGGTCGGTTCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGAACCGACCCAGGGCTTTGCCATTCCTAGGTAATGCGTCTTTTCCTACCACTGAGCTAAGTCCCCAGCCCCTAATGCATTTCTTTATATATAAATAAACCTTTAAAAAATGAAAAGAGGGGGTTGGGGATTTGGCTCAGTGGCAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAGAACCAAAAAAAAAAATATATTAAAAAAAAAAATGAAAAGAATGTGTTTAAAAAATAGTAATAAATATGTCCATGGACTTCCAGAAACATGGATAGGAGTACACTTTATCACGTAAGGTGAAATAGGTTAGAACTGAAATGGGAAAGTTGTGTTCTGTATCATGGGCGAAGGCGAAGCCAAGAATGCAGAATTGGGCACACAGTAGGAGAAACAAACCTGCCGAAGGGGACGACCCGCCGAGTGTGTTGTACAATTAATCTGGTATGAGTGAGTTTCTGTACTTGGGAGGCAGAGGCAGGTGGCCATCCAGGTCTACATAGCGAGTTCCAGGCCAGCTACAGTGAGTCGGCGAGACCTTGGCTCCATATATACTGTTTCTATTCAAAAATGTCACCCATGAGCAAGAAAAATGCACTTGCACAATAAACTGCTGGCTATTTTACTTTTAATAAAAAAAAATTATCATTGCTTTGGAAAGTAAAGCAGTCCAGAAGGTGGAGGAGCTGGGTAACCGAGAGCAAAGAGGATTTGGCAGAGGGCGTCTTCTACTTCTAGAGGAAGATGCTCTTCGTAACAAAACCCACGGAGTGGTATTCTATTGCTTTCACCCAGTGTAAAGTAAGGCATTTTAAATACATACGTAGGAATGTTTTTTCCGACTTAGGGGCAAGAGCATTTGACTATACCTACACTCTCTGTAGACCTTAAAAATAAGCCTATTTGACATGTGAATGAGGGTGCTGTAGATGACCTTGTATGTACAGTTAATATCCAATATCCTAGGGAAATGGAGAAACCAGGAAACAGCAGATGAGACTCACCTAAAACCGACAAAGGGGAGCAGCTCATCCTGTGCTTTACCAGAAGGCAAGGCAGCAAGACACATCACCAGCGTATAGTGTAGTCGCCTCACCTGTTACGTGAATCCGTGAAGTTCTAACATGTTTACACTTATTACTAGTCAATATTATTTTACAGCTATCATGAGGAAAAAGAAGCCCAGTTTATTTTAGAATGGCATAAAGAAGACTGATGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCTCCCAAGGCCCTGGGTTTGGTCCCCACCTCTGAAAAAAAAGAAAAGGAAAAAAAAAAAAGAAGAAGACTGATGTGTGATTCGTTGATAAGGACATTTTTATTCTAATTTTAG
Seq C2 exon
ATGTTCATGTATTGACTGAACCAATTGGGACCAGCCAGAAAAGTCACAAAGTGTGTGTGTGGCAAGGTAGAACCACCCAACACAAGGCATCGAGTGAAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496:ENSRNOT00000082252:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]