BtaINT0165109 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13239173-13246045:+
Coord C1 exon
chr28:13239173-13239268
Coord A exon
chr28:13239269-13244546
Coord C2 exon
chr28:13244547-13246045
Length
5278 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTATTTTTCTCATTTCTAGAAG
3' ss Score
8.61
Exon sequences
Seq C1 exon
GGAATTGCATTACTAAGCCAGAAGTGATCTTCAAGATCGAGCAAGGAGAAGAACCTTGGATACTAGAGGAAAGATTCCCAAAACAGTGGCACTCAG
Seq A exon
GTGAGTTAGTGAGTTCACAGGCAGATGGAAGCCAGAGGAAATGAGATCTTAGGCCATTGGTATATGATTCCAACCCCTGACCTTTGAAAGTGATTGACAGTTGGCCCACATACTTATGTTACCTTAATCACATTCTTCTGTATGTCACTTTCACTCATAAATCTTTCCCTTTCTTCTTTGACATTTTAGAGTCATCTACCTATAGTCATAATCCAAACTCATTTGGCTCCGTCTGAGATAATTTTTCTTGATTATTTTAAAACTGTCCACCTTCCATCTATTGTCTTTGGACATCTTTTGTTAGATGGTATGATTCATGTAATACTTTCATATATTCATTTAACAAATATATGGTGAGCATTCAGTATGACCCAATTATGTTTATACATAATTAAAAGACTGTCCCTATTATCAGAGTGTGTAATACAGTGAGAGACAAAAAGCATTCGTGTGTGTGTATGAAGATGTATGTGCATGTATACACACACACATGGTGTTGGGTGGTGGTAAGTACTGTGAAGAGCTGAAGCAGTGAAAAGGGGGTTAGAGAATGATAACATCCTATTTGTAATCAAATATACAGAATTCAAGAGAAAATGGGCTTCCCTCGTGGCTCAGCTAGTAAAGAATCCGCCTACAAAGCAGGAGACCTGAGTTCAATCCCTGGGTTGGGATGATCCCCTGCAGAAGGGAACAGCTACCCATGCCAGTATTCTAGCCTGGAGAATCCCATGCACTGTATAGTCCATGGGGTTGCAAAGAGTTGGACGCGACTGAGCGACTTTCACTTCACTTCAAGAGAAAATATATTTTATGAGGTACACAATAGATATGAGTCTCTAATAAATTAAAGTGTGAGCTCTGTGGATTCTGAATACTCCCGGCAGAGGGAACATCAGGTGCTGGTGTTAAACTTGTCAGACTAGTGTGCCGTTAGAGTATCTAAGGAAGTATAACGATGTCATGGTAGCTGGAGGTGAGTGGGCATGGGGGAGATTGGTAGGAGATGATGTCATAAGTAGCATGGACTGTGGCAGATATATTAATTTTATTTTGAGTGATGTGGGAAATCCTCAGGCTTTTTTCAGTATATATAAATCAAATTAAGCTAGCAGATTGGATTTACAGTTTAAAAGACTCTCTCTGACTTCTCTGTTGTGACCATGTGATGGGTGGATGGTGCTTAGGCACAAGCAAGGAAAGAATACCAGTTAGGATACTATTGTATACCCAGAGGAGAGAAGCTAGCTGCTCAGGCTATGTTGGAAATGCTGAAAAATGGTGGATTTGTACATATATCTTGAACATGAGGCCAAGAGGATTTGTTACTGGGTTGGATATAGAGTGTGAAAGGAGGAGGAGTTGAGCATGAATTCAGTGATTTGTTTCCAGTACCTGATAACTTAGAGTACTATTTACTGAGAGAAAAAATTTGGAGGAGCGATTAGAGGAGAGTTAGTACAGTTGGTCACAAGAAGCTTGGGATAACTGCTAGACTCTGGGAGAGACATACATAGAACTTCTTTGTAAAAGACCATACAGTAAATATTTTAGGCTTTGTGGGCCACACATGGTCTCAATTGCTGCTGCTGCTCTTCCTCCTCTTACATCTTTCTCTTCTTTCTCTTCCTCCTCACTCTTATATTTCCCTTTAAAAACATCCTTAGTTCTAGGCCCACAACCTTACAGTCAAGAGTTTGCTGACCCCTTTTCTAGAGAGTGGTTGTTTGTAAATGAGAGAGGTAGTTGTGGTGCAGTACTGCTTTTACAAGGTGTGTGAATCCACTAAATCTTGTCATTAGAGGAGATTGAGGGGAACAGTCTGAGTCACTTGAAAATTAGAGAGCCTGGTTTCCCAGGGGTCAAATAAGGAACATTCAGCCATCCATTACTACCTTAAATGGCAACCATGGGTTCAGTGTCCTAAACCTGTTATCCCCTGTTACTAGTTTTTTCAAATTCCTAATGTTATTTTCTTTTCCATCTTCTTCATATTCATCTATTCATTTTCTCACTTGTCACTGATACCTGACTTGATCTTCCTAGTTGTTGTTTTTTCCTGCCTAAAGCATCCAATTTATCTTTCACTAGCCTAACAAAGTTGATCCTTATTAATAAATGAAATCAAAATCTCCTTTCAGTGACTGTCACAGTCTAGCGCTGTTTTACATATCTGTATCTTTTTTACTGCTCTTCAGAGTTCATTTTAAACTTCATGCTATCTTATGTCTTAAATTTCACTTTTAAATATTTTTTCTTTTTTCTATAATTTTCACTTTAGTTTATTTTGCCTTTTAAGTAACTTAATTAAAATTGGGCATGCAAAGTGTTTAAACATTGCATGGTCTATAATAATGGCTTGTTGTTATTATTTTGGGCTTCCCTAGTGGCTCAGAGGGTAAAGCGTTATTATTGTTTCACTTACTTTAAGTTAGTGATCAATTTTTTGCTGTAACTTAAATAGTCTGTATTTTATAACCCTAATCCACTAGCATCTGTAGCCCCAAAACTCATACCTGATGATATGATTGTTGCTTAGGGTTTCTATCATTGCTGAGATGTTGTTTTCCCAAAGCGAAGCTTGAGATAATTATTTGAATCTGAGCTGGAATAAGTTTCATACATATATTACTCCAGGATTCTTGGGCTTCCCTCATGGCTCAGCTAGTAAAGAATCTATCTGCCTGCAGTGTGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCTTGGAGAAGGGAACAGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTGTATCGCCCATGGGGCCACAAACAGTCGGACACAACTGAGCGACTTTCACTTTCAGTATATATAGATATATATGTACACATATATATGTAATGTACATATATATCTATATATACACACACACATACATATATATACATACACACCATATATGGTATAAAGTACATAGTTGAGGCCAGAACTAGAAGTATCCATACTTTCCTTTCATACTTTTCCTGATTCTGATATTTTAATAATTACTTTGTTGAACCAAGTTTAGAAGAGATCACTCTTTTTCATCCATTCAGAAAGCATTCTATAGTATTTTTACTAAATGCACATTCTCTTATTTTATCCTGAAGTACAGGTTGAAAATAATTCATACGCACATCAGTTTTTAAGAATCATAAATGTCCTGTCTCCTCAGTGAAGTCAGAGGAAATAGAATTTTGCTAACACCTGCCTAGACTGTGATCATGACACAGGGTGTATCGTTGAGCAATGGACTTGTTTCATCTTACAGTGAATTAAACAGGTAGTAACTTCTAAAGGCAGCAGGTGGAGACTGAAAATGATAGGGATGTTGTAGAGTTTGTTGGCTTTGTTATTTTATTATTAGTTTTGTGGTTTGTTGTTTTAAATTAAAGTAGCATTTCCTGGAGGATGTTCAGGTCCCAAGAAGAGCCAAGGCTGGAGTGTAACTAATTACATAAAAGGTGTGTTTTTGAGAATGAGCAATTTGTTAAATATCCAGCTAGAACTGCACATATTTTTTAATGGACTTACAGAATTATGACTTGAACTCATAATATGAATTCAGTTTTTGTTTTAATTTGTGTTTGTCAAGGTAGTAACTATTATCAGTTAGTCTTTGGAGCCATGGACTCAGGACTGTTTTAGATTTTTTTTTTAACATATATTAATATTGTTTCACCTAGTTAGTCACTCAGTCATGTCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGGGATCTTCCTGACTCAAACAGTCGAACCTGGGTCTCCTCCTTTTCAGGCAGATTCTTTACCATCTGAGCCACCTGGGAAGCCAGTTTCATTGAGTAGTGACAGTAAAGAATAGCCAAGAATTTTTACAATAAAGTTTGTTGAAGGCCTCAGAACCATATATTAACAGAAAAATATGATCGTTATAGGTCTCATCTGTAAGCAAAAGCCACAGATAGTCTAGATATGAAAGCAGAAAACCTTGATGTAAATGATAAACTTAGATATGAAAGCAGACTTAAAGATCAGTATTGGTTCAGGAACAAAATTGTTTTGGGGGAAAGTAAGGCAGCAGATTGAAATAAAGAAACGTATGCCTTGATGGTTGGGACAACTTCATTAACAGCTGTGAGTCCACAGAATGAGCCTGGTCCTTTTGCAGAGATGGTCTGTCCATCATCTGTTTTGTATTTCCTGTTGGGCATTTGTGTTGTTGCGAATCACAGCTTGATAGAGAGTTAGAGTCTGGATTAAAGCATTGTCCTTTAGAGCATGAGGAAGTAGGTACCTTCAGAAATTTGTTTTGATGTTCATATATCAAATGGGAAAAAGGAATAGTAACATGCACATTAGTGAGGCTCCTACCACAGTAATCAAGCTGTGGGAAGGTAAGGACAAGAAAGCATGATCTGCCTCTGTCAAACTGAGTTCATCCTCTAATATGTTTCTTAAACAGTCTATTTTTCTTGAGAAACAAATGAACAAAACAAAACAAAAAAACCTCTCTTGTTAAACTCATCCAGTTCTTGGAGTTTCCTGTTCCCTAAATGAATAACTCTTACAAAATCTCCATCCCTTGCTTACCATGTCTTATTATAATTATTCCATGTGAATTAAAGGAATCCTGAACTCTCAGACTATTCTTCTGAACCTGAGGCAGTTGGTGTTTTCAGAACTTTAGTCTGGTGTTGATGTGTAGAGTAGAAGTGAGTACTCTAGTAGGAATCACACCAGGTAATCAGTGTCTGAGGGGGTTAGGACTCGACTGTTTGGTTTCCACAAAACATAGTTCATTTTCTGAAAGCCCTTGTCTACTAATCTTCAGTGTAATGATATTCAGTGTTCAATGTCTCTGTTGGGCTCACTCCATTCTCTTGAGTTTCCTGATTTCTGAATCAGCCACTCTCTGGTTCCCTGTGTTTTGAATATATTTCACCTTTTTCTGTCTAGTTTTAAAGTGTGTATTAATAAAGTATTAAATGTTACTGCCAGTTTCCTTCCCCTATTTTTACTGAAGCATGTTTTTATTTTCCACTCAAACCAGAAGAGTAAAGAAAATGTATGCTGGATTTTAGTTCACACCAGAAAACTGAGCCTAAAGCAAAAGAACTAACTGTGTAATAGGGCATTTGTGTAAAAGTCGAATTCAATTAGAAATGTACTAGGATTCATAAGATGTGGTTATTTTTCTCATTTCTAG
Seq C2 exon
AAGACTGGAAAGTTGATGACCTAATAGACAGCACCCAGGAAAATCAAGATGAACATTTTTGGCAACTTGCTTTCACCAGCAACAAAACATTAAGTACAGATAGTGGTGACAGAGTAAAGAAAACTTTAAATCTAGGTACAGACTCCATTCCTTCGAGCAATTTTCTATATAAAATATGTGACTCATGTGAAGTGAGTTTGAAAAATATTTCAGGCTTAATTATTAACAGAAAGAACTATTCTGGAAAGAAGCCTGATGAGTTTAATGTATATGAGAAATTGCTCCTTGATATTGGGCATGACAAAGCTCCTCTTGGAGGGAAATCTTATAAATATAATCAAAAAAAGAATGTCCTCAATCATGGACAGGATCTCACTCAGTCAATTTTTGACCAGCCTTTTGAGTATAATGAAAATGGAAGAGGCAACCATGGAGAGGCAGCCTTTTTCACAAATAAGAAAGTTCAGATAGGAGAGACACACTGTAAATATAATGAATGTGGAAGAAACTTCATCCAAAGTTTGAAGCTCAGTTTATCTCAGAGAACTCTTTTTGAAATGGAGCCATGTGAATGCAGCATTTGTGGTAAGTCCTTCTATATGGATTTAAGATTCGGACATCAGAGAGCTCTTATGGGGGACAGTCCTTATGAATATAATGAATATGGGCAAATTTTCTGCGGCAATTCAACTTTTGTTATCCATCAGGGAACTTACACAGGAAAGATTCCCCATGAATATAAAGTCAGTCACAAAACATGGGAAAAGTCAGCTCTCTTTAAACATCAGATAGTACACATGGGGGGAAAACCTTATGAGCACAATGAAAATGGAAATACTTTCAACAAGAAGTCACATCTCACCCAACTTCGAAGAGCTCACTCAGGAGAAAAAACCTTTGTGTGTGGTGAATGTGGGAAAACATTCTGGGAGAAGTCAAACCTCACTCAGCATCAGAGAACACACACAGGAGAGAAACCCTATGAATGTACTGAATGTGGGAAATCCTTTTGTCAGAAACCACATCTTACCAACCATCAGCGAACACATACAGGAGAAAAACCCTATGAATGTAAGCAGTGTGGGAAAACATTCTGTGTGAAGTCAAACCTCACCGAACATCAGAGAACACACACAGGGGAGAAACCCTATGAATGTAATGCATGTGGAAAATCATTCTGCCACAGGTCAGCCCTAACTGTACATCAGAGAACACACACAGGAGAGAAACCCTTTATATGTAATGAATGTGGTAAATCCTTCTGTGTGAAATCAAACCTCATTGTACATCAAAGAACTCACACAGGAGAGAAACCCTACAAATGTAATGAGTGTGGGAAAACCTTCTGTGAGAAATCAGCTCTCACTAAACATCAGAGGACTCACACAGGGGAGAAACCCTATGAGTGTAATGGATGTGGGAAAACCTTTAGTCAGAGGTCAGTACTCACTAAACATCAGAGAATTCACACAAGGGTGAAAGCTCTTTCAGCATCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592:ENSBTAT00000025240:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]