MmuINT0178805 @ mm10
Intron Retention
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118427319-118432946:-
Coord C1 exon
chr6:118432857-118432946
Coord A exon
chr6:118430395-118432856
Coord C2 exon
chr6:118427319-118430394
Length
2462 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTCTTTTTCTCATTTATAGAAA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GGCATTGTGTTACTAAGCCAGATGTAATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAAAATGGATTCCAGTGCCACCCAG
Seq A exon
GTACAGTAGTGAATTCACTAGCAAGGGAAGTAATCTGTGTCACTGGGTAAGATAGGTCACTGTCTTAGCGTTCTATTACTATAAAGAGACACCATGACCACAGCTACTCTTAATTGGGTCTGGCTTACAGTTCCGAGGTTTAGTCCATTATCATCATGGTTGGTAGCATGCTGGCACACAGGCAGACATGGTGCTGGAGAGGTAGCTGAGAGTTCTACACCTGGATCAGCAGACAGCAGGAGTAGAGGAGCTACTGGCTTGAGCTTCTAAAACCTTAGAGCCCACCTCCAGTGACACACTTACTCCAACCAGGCCACATCTCTTCATCCCTCTCAAGTACTGCCACTCCTTGGTGATCAAGCGCTCAACTCTATAAGGCTTTAGGGGCCATTCCTATTCAAACCACAACAGTTGCCTTTGGAATATCTTTCAGAAATTCCTGTTTTTACATCAGACTTTTGGAAATACCCAAGAGCAGCATCCCACAGCTTATCTCAGTGGCTTCTCCATCTGTCTCTAATCCAGAGGCACCTTTCCTTTTGTCTTGACATTTGGAGTAATTTATTTTTACCTATAAATCTGAAGTCAGTTGGCTTTGTTTTAGAGACTTTTTCTTGGCTTGTCTTCCTTTATCTTTAAGAATTATGCACCTTCTCTCTGTCTTCTTTGAGCAACTTTCATTAGCTAGCATATCCTCATGTACTTCTGTAATTCCACTTACCAGGTGTATAATGGTGAACATCTACTCTGATACACTTTAATTGTTGTTCTCTGGAATAGTGGAGTGCTATAGAATTTTTAATTAAGCATATGATTATTAACATTCTTGCATTGAGCACCAGTAGTTAAGAATAGCCAATGTTTTATGATAAAGTATATTGAAAGGCTCAGTAACAGATACAGAATATGACACTTAGGGGGCCCATACTTGAATAGAAGATACAGTTACATGTTAAAGCAGAAAACCTATGTGTAAAGGAAAAAACCTAGAAATAAAGACAGACTTAAATACCTAGTATAGGAAAATATGTACCCTGAGGGCTTAGGAGTGACCAGGATAGCAAAGGTGCATAGAAAGCAGACTATAAGACAGCTGAGGGTAAGACAGCTGAGGGTAAGACAGCTGGGTAAGACAGCTGGGTAAGACAGCTGGGTAAGACAGCTGGGTACGACAGCTGGGTAAGACAGCTGGGGGTAAGCCCTGCTTGGACGTGGCCAGATGTACTTCTTCCTTTGTTACGTTTCTCAGACATCCTGGGTTTTCAAAACGATTCAACTGCTCCTTTGTGATTTTTTTTATCCCTTGGATAACAGCTCTGCTAAAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTCAATGCCCAGCATCCAGCCATGCTCAAAACTTGTCTGTACCTCCAATTCCAGGGATTCTGACACCCTCACACAGACATCCATGCAGACTTAACACCAATGCACATAAAATAAATACAAATAAACAAATCTTAAAAAAAAAAAAAAAGAAGAGGCAGAAGCCCTCTAGATCCCAGGCTCCTGGACTGTTCTTTTAAACCTGAAGAAGTGGGAGTGTCTAGAACTCTTAAGTAGTTCAAAATGTGTAGTGTAGAAAAGCCAGAGTGTCTAGAACTCTTAAGTAGTTCAAAATGTGTAGTGTAGAAAAGCCAGGTGTGGGTTGGTGAGATGGCCCAGGGGGTAAGAGCACCCGACTGCTCTTCTAAAGGTCCTGAGTTCAAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGATATCTGACACCCTCTTCTGGAGAGTCTGAAGACAGCTACAGTATAAAAAAAAAAAAAAAAGAAGAAGAAGAAAAAGAAGAAGAAAAGAAAAGCCAGGTGTATGATGGGGACCTCTTTCAGTGCTCCGTGCGCGGTGTCAGGCTCTTCCACCATGTCTTGTTCTCCACCCAATGCACCCCTCGCTTACTGATCTTCACTGCCACTTTGCTGGTTTTCATTGTTTGCTGGGCTCATCATTTGAATATTGTGACTTCTGGATCAGTAAATGAATTCCCTATGAAGTGAATTTCATTTTGTATTTTTGTGTTGCATTCTGAAGTTTATGTTTTAAACATAACTAGTTCCCTATGCACAGCTGCTTCCACTATATATCCACGTTTGTGGTTTCTCTTCCAACCAGGGTGGTAAAGGGAACATTCCGGATTCAGTTTGTATCAGGAAAAGGAATCTAAAACAAAAGAACTATAAAGAATTTCTGTAAAAATTCACACCCACTAGACATGTGCTAAGGCATGTTAGCTTCCCGAGTCCTTCCCCTGCTTTGCGGAGGGCCTTTTTCTCTGTGTGCCTGGTGTGTGCTTCCTTACCCGTAATAAAAGCCTTTCTTTTTAAAAAGGACAAGTATTAAGATTCATAAGGTGTGATAATTCTTTTTCTCATTTATAG
Seq C2 exon
AAAGGAAATGGAAAGTGGACGACCTATTAGAGAGCAACCAGGAAAATCAAGATGGACATTTTTGGCCACTCATGTTCACCAACAAGATCACAAACCTAGAGGGTGGAGGTAACACAAGAGAAACTCCCAGTCCAGACATTGACTCTGTATCTTCAAGAAGTTTTCTGCTCAAAGTATGTGACTCATGTGAAATGAATTTAAAGAATGTTTCAGCTGTAATTATTAGCAAAAAGAACTATTCCAGAAAGAAGCTTAACGAGTTTAATATACATAAGAAACCACTCCCTGACAGTAGGCGTGAGAAGATTCCTGTAGGAATAAAGTCATGTGACTATGATGGGGAAAGGGATGGCGTCCGTCTGTGCCGGGATCTCGCTCGGCCAGTTTCTCATCAGCCTTTTGAGTATAACGAAACAGGACAAGGCTTCTGCGAGGAAGTGGCCCTTTGTACAAGTCAGAACTCTCAGCTAGGGGAGACTCTCTATAAGCACACTGAATGTGGAAGAACTTTCGTTGACAGTTTGAAGCTTAGTGTATCTCAGAAAACACGTTTGCATACAGAACTTCATGAGTGCAGTATTTGTAGAAAGTCCTTCTATGTGGATTTGCAGTTTGGACATCACACAGCTCTCTCAGGAAGCAGTCCTTACGAGCGTAACGAATATGAGAAACTCTTCTGTGACGGTACAGCTTTCATCGTCCATCAGGAAGCTTACACGAGAAAGATCGCCCAAGAGTATAAAGTGAGTAACAGAACTTGGGGAAAGCCAGCTCTCTTCAAACATCAGATAATACAGATGGGAGGGAAACCCTATGAATACTATGAAAACAGGAAAAATTTCAGCAAAAAATCACATCCCACCCAGCCTCGAAGACCTCACGTGGGAGAAAAGACGTTTGAATGTGGTGAATGTGGTAAAATGTTTTGGGAGAAATCGAACCTTACCCAGCATCAGAGAACACACACCGGAGAGAAACCGTATGAGTGTACCGAATGTGGGAAAGCCTTCTGCCAGAAGCCACACCTTACCAACCATCAGCGGACACACACGGGAGAGAAACCCTATGAGTGCAAGCAATGCGGAAAGACGTTCTGTGTCAAGTCAAACCTTACTGAGCATCAAAGGACACACACTGGGGAGAAACCCTATGAATGCAACGCATGTAGGAAGTCCTTCTGCCACCGGTCAGCCCTAACTGTCCATCAGAGAACACATACAGGAGAGAAACCATTCATATGCAGTGAGTGCGGGAAGTCGTTTTGTGTGAAGTCAAACCTGATTGTCCATCAGCGAACTCATACAGGGGAGAAACCCTACAAGTGCAACGAGTGTGGGAAAACGTTCTGTGAGAAATCGGCGCTCACCAAACACCAGAGAACTCACACAGGGGAGAAACCCTATGAATGTCACGTGTGTGGGAAGACCTTCAGTCAGAGGTCGGTACTTACCAAGCATCTGAGAATCCACACGAGGGTGAAAGCTCTTTTAGCATCCTGAGTGTTTAGCTTTCGCATGCCTGTCAAGTCCATTGTAGTTTTAAAAATGAGCTTAGAGCCTGCCAAAGAATACCACAGAGTACTAGAAAATACCATCGTGTTGGAATGCATGGAAGCTTTCAAGAAAAGAAGAAACTTTCATTTGAAAGATTGTATTGAAGGGAAATTATTCATATAAATAATATGGTAATAAACTTAGAAATTAAATTGTATAATGTCTTCCAAATCTGTCTTTTAAATATAATGGTTAATATTAATTTTACTTGTATTCATAGGAAAGTATGAAACTTAAAAATGAGCGTCTACAGCATTGACCATACATGTAAAGACAGCCGGTGTTTATAGACCTTGTGTGAGTATGTTAATGTAACAGAAGTCTAGGAAACCCTGGATTTATGATTTATTGGAACCCAGAAAGGATGTGAGGAAGATGAGCCCTTAGTTTAGCAACTGTTATGGAATACTTTCACACTAAATACCACCAGCGTTTTTATAGGTTGATAGGATTATGTACGCTTCTGAACATATTTGTGAATGTGATCTAGATGTGTGAATATGTAAATATACCTGTATGCATGTACCTGTACACAAATGGTGTTGTCACAAAGGCAGCTCACACCATTTAAAAGTGCTGATGATTGTTAAAATGTCAGGATTTTTGTGGCTCAATTGTCTAATATTACATGAAATTGCAGCTCAATTATACTGAGAGCAAAGGAAATAAACAACACTTGTCATTCCTAACACTCTGCTGTATCTCACTGCTGTCTTGGCTGTGTACCATCGGTCTCCATGCTGAGAGTGCTGTAGAGTGGTTCACTATTGTATATCTCCTTCAGTTACCTCCCATGTGTGCGTGCACACACACACACACACACACACACACACACACACACACACACACACACACGCCATTGCTCCGCTCATGTTGGTAGCTTGCCCTTAGGACGTTTATACTGTAGGAACTGATAAAGCATGTGTCAGAGCTTGATTTTCTCAGAGAAGCCGTGTGTATATAAACTATGTGGTAGATTTAAAATATAAACTGCCCCTCTTTGTATTTCCTAAAATAAATAAATGGCTCTGGCCATCATTGTCAAATTGCCTCTATAGTAAAGAAGCCAAAGATGGTTTACTGAGCCTTTTAATTACCTCAGAACTATCCAGTTCTAAATACTACCAGTCTCGATAGCTTGGTCAGTATATGCTTCAAGTAACATTATTATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCTTCCCCTCTCTCTCACACACACATATATTATCACAGACTTTTCACTATTTTGGACCATGAATAAGTATGGCCATTATTACCAAACTACCCATTTGGTGAGGAAATGAAACAGTATATTTCTGAGAGTTTTTCTTAGCTACCTCTATGTCAATCATATAGATGCTGTTAATAAAAGTGATATTTACATGACTTAACTCGAGTTGTCAATGGTAATGCTACACTCTACAAATTTAAAGATGGTAGTATATAATAAAATGTTCATATTATACCCTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145:ENSMUST00000069292:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types