RnoEX6037285 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114366456-114375975:-
Coord C1 exon
chr8:114375964-114375975
Coord A exon
chr8:114372834-114373327
Coord C2 exon
chr8:114366456-114366552
Length
494 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTGTCTTTCAGGAA
3' ss Score
13.33
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
CTGTCAGACACG
Seq A exon
GAAAACCTGAGTGCCCAGTGCATCCAACTGAGTTGGTGTTTGTCCTGGACCAGTCCCGGGATGTCACAGAACAGGACTTTGAGCGGATGAAGGGGATGATGGCCTCCTTAGTTAGGGACATCAAAGTTAGGGATGCCAGCTGCCCCGTGGGTGCCCGCGTTGCCATCCTAGCCTACAACTCCCACACCAGGCACCTCATCCGCTTCTCGGATGCCTACAGGAAGGACCAGCTGCTCAGGGAAATTAAAGCTCTTCCTTACGAGAAATCCTCCGACAGCAGGGAGATTGGCAAAGCCATGAGGTTTATCTCCAGGAATGTCTTCAAGAGAACCCTCCCAGGGGCTCACGTGAGAAGAATCGCCACGTTCTTTAGCAGTGGCCAGTCAGCCGATGTCCAGTCCATTACCACAGCTGCCATGGAGTTCAGTGCCCTGGACATCATACCAGTGGTGATTGCATTCAGCAACGTGCCCTCGGTCAAGCGTGCCTTTTCG
Seq C2 exon
ATTGATGACACTGGTACATTCCAAGTCCTTGTGGTTCCCTCCAGGCCTGACCAAGTGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-'36-39,'36-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(92.8=93.3)
C2:
PF0009223=VWA=PD(6.0=30.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]