RnoEX6038239 @ rn6
Exon Skipping
Gene
ENSRNOG00000032884 | Scn11a
Description
sodium voltage-gated channel alpha subunit 11 [Source:RGD Symbol;Acc:3630]
Coordinates
chr8:128476904-128482185:-
Coord C1 exon
chr8:128481829-128482185
Coord A exon
chr8:128478346-128478747
Coord C2 exon
chr8:128476904-128477017
Length
402 bp
Sequences
Splice sites
3' ss Seq
TCCCTTACTACTCCCCTCAGGTG
3' ss Score
8.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTGAGGGTCTTCAAGTTAGCCAAATCCTGGCCCACGTTAAACACTCTCATTAAGATCATCGGCCACTCCGTGGGCGCGCTTGGAAACCTGACTGTGGTCCTGACTATCGTGGTCTTCATCTTTTCTGTGGTGGGCATGCGGCTCTTCGGCACCAAGTTTAACAAGACCGCCTACGCCACCCAGGAGCGGCCCAGGCGGCGCTGGCACATGGATAATTTCTACCACTCCTTCCTGGTGGTGTTCCGCATCCTCTGTGGGGAATGGATCGAGAACATGTGGGGCTGCATGCAGGATATGGACGGCTCCCCGTTGTGCATCATTGTCTTTGTCCTGATAATGGTGATCGGGAAGCTTGTG
Seq A exon
GTGCTTAACCTCTTCATTGCCTTGCTGCTCAATTCCTTCAGCAATGAGGAGAAGGATGGGAGCCTGGAAGGAGAGACCAGGAAAACCAAAGTGCAGCTAGCCCTGGATCGGTTCCGCCGGGCCTTCTCCTTCATGCTGCACGCTCTTCAGAGTTTTTGTTGCAAGAAATGCAGGAGGAAAAACTCGCCAAAGCCAAAAGAGACAACAGAAAGCTTTGCTGGTGAGAATAAAGACTCAATCCTCCCGGATGCGAGGCCCTGGAAGGAGTATGATACAGACACGGCTTTGTACACTGGACAGGCCGGGGCTCCGCTGGCCCCACTCGCAGAGGTAGAGGACGATATGGAATATTGTGGTGAAGGCGGTGCCCTACCCACCTCACAACATAGTGCTGGAGTTCAG
Seq C2 exon
GCCGGTGACCTCCCTCCAGAGACCAAGCAGCTCACTAGCCCGGATGACCAAGGGGTTGAAATGGAAGTATTTTCTGAAGAAGATCCGCATTTAAGCATACAGAGTACTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032884-'27-20,'27-19,28-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.343 C2=0.816
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(61.5=100)
A:
PF0052026=Ion_trans=PD(4.2=6.0),PF065128=Na_trans_assoc=PU(47.0=81.3)
C2:
PF065128=Na_trans_assoc=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCCACGTTAAACACTCT
R:
CTTGGTCTCTGGAGGGAGGTC
Band lengths:
358-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]