RnoEX6038444 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3159038-3167610:-
Coord C1 exon
chr9:3167572-3167610
Coord A exon
chr9:3161077-3161432
Coord C2 exon
chr9:3159038-3159144
Length
356 bp
Sequences
Splice sites
3' ss Seq
TGTTGTATCCATTGATCTAGGCA
3' ss Score
7.13
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTAATATCAAGATTATCGAACAAATCTACAGTCCCACAG
Seq A exon
GCAGAGCCCAAGGGGAATGGAAGCATCAAGAAGAGACTCCCATCCATTGTGGAAGATGAGGAAGAGGAGGAAGTGGAGGAAGAGGAGACCACCTCCCTTTCTCCCATCTACACAAGGGGATCCTCTGTTTCACACAGCAAAAAGACTGGAAGCAGTAAGAGCTATCTAGGTTTGAGCTTAAAGCAACTGGCCTCAGGAACAGTTCCATTCCACTCACCTATCAGAGTCTCCAGTGCCAACTCCCCTAAAACCAAGCAGGAAGCTGACCCACCTAACCATGGCACACGGAAAGAGAAGAATCTGAAAGTTCAGCTCTGCAGCCTGGGTACTGCTGGAACCCCAGAGCTCAGTCCGAG
Seq C2 exon
GATTGTCGATGGAATTGAAGATGGCAACAGCAGTGAGGAAACTCAGACTTTTGATTTTGGCTCTGAACAAATCAGGCCAGAGCCCAGGATTTCCCCTTCCCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.807 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 27453045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation. ELM ID: ELMI003176; ELM sequence: LPSIVE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]