RnoEX6040759 @ rn6
Exon Skipping
Gene
ENSRNOG00000019527 | Chrnd
Description
cholinergic receptor nicotinic delta subunit [Source:RGD Symbol;Acc:2352]
Coordinates
chr9:94287381-94288483:+
Coord C1 exon
chr9:94287381-94287425
Coord A exon
chr9:94288062-94288171
Coord C2 exon
chr9:94288328-94288483
Length
110 bp
Sequences
Splice sites
3' ss Seq
CGTCTTTTATGGACTTCTAGGCA
3' ss Score
7.06
5' ss Seq
CAAGTTGAG
5' ss Score
-10.48
Exon sequences
Seq C1 exon
AAAGAAGTGGAGGAGACCCTCACCACCAATGTGTGGATAGATCAC
Seq A exon
GCATGGATAGACAGCCGGCTACAATGGAATGCCAACGAGTTTGGGAACATCACCGTCCTGCGCCTGCCCTCTGACATGGTGTGGCTACCAGAAATTGTACTGGAGAACAA
Seq C2 exon
CAATGACGGCTCATTCCAGATTTCTTACGCCTGCAATGTGCTTGTTTCTGACTCGGGCCATGTGACCTGGCTGCCACCCGCCATCTTCCGCTCCTCCTGCCCCATCTCGGTCACCTACTTCCCTTTTGATTGGCAGAACTGCTCCCTCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019527-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.3=100)
A:
PF0293118=Neur_chan_LBD=FE(16.2=100)
C2:
PF0293118=Neur_chan_LBD=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCTCACCACCAATGTGT
R:
GAATTTGAGGGAGCAGTTCTGC
Band lengths:
186-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]