MmuEX6026014 @ mm9
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:89088095-89089216:+
Coord C1 exon
chr1:89088095-89088139
Coord A exon
chr1:89088789-89088898
Coord C2 exon
chr1:89089061-89089216
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTTTGGACCTCTAGGCC
3' ss Score
9.3
5' ss Seq
CAAGTTGAG
5' ss Score
-10.48
Exon sequences
Seq C1 exon
AAAGAAGTGGAGGAGACCCTCACCACCAACGTGTGGATAGATCAT
Seq A exon
GCCTGGGTAGACAGCCGTCTACAGTGGGATGCCAACGACTTCGGGAACATCACTGTCCTGCGCCTGCCCCCTGACATGGTGTGGCTACCAGAGATTGTACTGGAGAACAA
Seq C2 exon
CAATGATGGCTCGTTCCAGATTTCTTATGCCTGCAATGTGCTTGTCTATGACTCGGGCTATGTGACCTGGCTGCCGCCCGCCATCTTCCGCTCCTCCTGCCCCATCTCAGTCACCTACTTCCCTTTCGACTGGCAGAACTGCTCCCTCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.3=100)
A:
PF0293118=Neur_chan_LBD=FE(16.2=100)
C2:
PF0293118=Neur_chan_LBD=FE(23.4=100),PF0181912=Levi_coat=PU(7.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACCCTCACCACCAAC
R:
GAATTTGAGGGAGCAGTTCTGC
Band lengths:
189-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: