HsaEX6019174 @ hg38
Exon Skipping
Gene
ENSG00000135902 | CHRND
Description
cholinergic receptor nicotinic delta subunit [Source:HGNC Symbol;Acc:HGNC:1965]
Coordinates
chr2:232527401-232528656:+
Coord C1 exon
chr2:232527401-232527445
Coord A exon
chr2:232528262-232528339
Coord C2 exon
chr2:232528501-232528656
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACATGCCTTTGGGATTCCAGGGC
3' ss Score
5.11
5' ss Seq
ATGGTGTGG
5' ss Score
2.28
Exon sequences
Seq C1 exon
AAAGAAGTTGAGGAGACCCTCACTACCAATGTGTGGATAGAGCAC
Seq A exon
GGCTGGACAGACAACCGGCTGAAGTGGAATGCTGAAGAATTTGGAAACATCAGTGTCCTGCGCCTCCCCCCGGACATG
Seq C2 exon
CAATGACGGCTCCTTCCAGATCTCCTACTCCTGCAACGTGCTTGTCTACCACTACGGCTTCGTGTACTGGCTGCCACCTGCCATCTTCCGCTCCTCCTGCCCCATCTCTGTCACCTATTTCCCCTTCGACTGGCAGAACTGCTCCCTCAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135902-'2-4,'2-3,3-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100)
A:
PF0293118=Neur_chan_LBD=FE(29.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACCCTCACTACCAATGT
R:
GAGCAGTTCTGCCAGTCGAAG
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains