RnoEX6041999 @ rn6
Exon Skipping
Gene
ENSRNOG00000029964 | Tmprss11g
Description
transmembrane protease, serine 11G [Source:RGD Symbol;Acc:1306446]
Coordinates
chr14:23189274-23193142:+
Coord C1 exon
chr14:23189274-23189392
Coord A exon
chr14:23191999-23192066
Coord C2 exon
chr14:23192982-23193142
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTTATTTTTCAGATA
3' ss Score
12.58
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
AAGAGAAGACTCATTACTACCAGGCCTCCTTTTGGATTCCCAGTATTAAATATAGCTCAGATTTGTCCGAAGAGCAGTCAAAATTGCAGATTAACCTGAAACAAAAAATCAACAATGAG
Seq A exon
ATAGATGTGATATTTCAAAGATCCAGTTTAAAGCATCATTATGTCAAATCTCAAGTTGTCAACTTTCG
Seq C2 exon
GCCCAGTAATGATGGTGTGAAAGCAGACATACTGATTAAATTTCAGATTCCCCGTAAGAATGCGGATACTTTAAGAAGTCAAGCTGATAGCATTTTGAATAAGAAGTTGCAGTCCTCCCAGAGCTTCTTGAAGAGAGACATTTCCTTACCTTATCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029964-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGAGCAGTCAAAATTGCA
R:
TCTGGGAGGACTGCAACTTCT
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]