BtaEX0000939 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BJM8]
Coordinates
chr6:85428595-85430848:-
Coord C1 exon
chr6:85430730-85430848
Coord A exon
chr6:85429381-85429448
Coord C2 exon
chr6:85428595-85428755
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTCTCAGATA
3' ss Score
11.49
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
ATCAGAAGGTTCATTATTACCAAACTTCCTTCCAGATCCCTAGTATTGAATATAATCTTGATTTTTCAGTGGAACATTCAAAAAATAGGACAGACCTGAAACAAAAAATCAGTAGTGAG
Seq A exon
ATAGATGAGATATTTCAAAGATCCAGTTTAAATCGTCATTACATCAAGTCTCATGTTTTCAATGTTAG
Seq C2 exon
GCCAAGTAATAATGGTTTGAAAATAAACGTATTGCTCAAATTTCAGTTTACCTCTAACAATGCAGACACAATAAAAAGAGAAGCTGACAGCATTTTGCATCAGAAGTTGAAATTAAATGAAAGCTTCTTGAAGATAGATACTTCATTGCCCTATCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025920_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACTTCCTTCCAGATCCC
R:
TGTGTCTGCATTGTTAGAGGT
Band lengths:
171-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development