MmuEX6018464 @ mm10
Exon Skipping
Gene
ENSMUSG00000079451 | Tmprss11g
Description
transmembrane protease, serine 11g [Source:MGI Symbol;Acc:MGI:2444058]
Coordinates
chr5:86496506-86498576:-
Coord C1 exon
chr5:86498458-86498576
Coord A exon
chr5:86497254-86497321
Coord C2 exon
chr5:86496506-86496666
Length
68 bp
Sequences
Splice sites
3' ss Seq
ACATTCTCTTTCTTTTTCAGATA
3' ss Score
13.63
5' ss Seq
TCGGTAACC
5' ss Score
5.34
Exon sequences
Seq C1 exon
ATGAGAAGACTCATTACTACCAGGCCTCCTTCTGGATTCCCAGTATTAATTATAGCTCAGATTTGTCCAAAGAGCAGTCGAAATTTCGGACTGGCCTGAAACAAAAAATCAGCAATGAG
Seq A exon
ATAGATGTGATATTTCAAAGGTCCAGTTTAAAGCATCATTATGTCAAATCTCAAGTTGTCAACTTTCG
Seq C2 exon
GCCCAGTAACGATGGGGTAAAGGCAGATGTACTGATTAAATTTCAGATTCCCCGTAAGAATGCGGGTACTTTGAAACGGCAAGCTGATAACATTTTGCAGGAGAAGTTGCAGTCCTCCCAGAGCATCTTGAAGAGAGACGCTTCACTACCTTATCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079451-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGGACTGGCCTGAAACAA
R:
TCAAGATGCTCTGGGAGGACT
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types