MmuEX6018464 @ mm9
Exon Skipping
Gene
ENSMUSG00000079451 | 9930032O22Rik
Description
transmembrane protease, serine 11g [Source:MGI Symbol;Acc:MGI:2444058]
Coordinates
chr5:86925531-86927601:-
Coord C1 exon
chr5:86927483-86927601
Coord A exon
chr5:86926279-86926346
Coord C2 exon
chr5:86925531-86925691
Length
68 bp
Sequences
Splice sites
3' ss Seq
ACATTCTCTTTCTTTTTCAGATA
3' ss Score
13.63
5' ss Seq
TCGGTAACC
5' ss Score
5.34
Exon sequences
Seq C1 exon
ATGAGAAGACTCATTACTACCAGGCCTCCTTCTGGATTCCCAGTATTAATTATAGCTCAGATTTGTCCAAAGAGCAGTCGAAATTTCGGACTGGCCTGAAACAAAAAATCAGCAATGAG
Seq A exon
ATAGATGTGATATTTCAAAGGTCCAGTTTAAAGCATCATTATGTCAAATCTCAAGTTGTCAACTTTCG
Seq C2 exon
GCCCAGTAACGATGGGGTAAAGGCAGATGTACTGATTAAATTTCAGATTCCCCGTAAGAATGCGGGTACTTTGAAACGGCAAGCTGATAACATTTTGCAGGAGAAGTTGCAGTCCTCCCAGAGCATCTTGAAGAGAGACGCTTCACTACCTTATCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079451-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.5=95.0)
A:
PF0139015=SEA=FE(20.0=100)
C2:
PF0139015=SEA=PD(43.6=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGGACTGGCCTGAAACAA
R:
TCAAGATGCTCTGGGAGGACT
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: