RnoEX6042065 @ rn6
Exon Skipping
Gene
ENSRNOG00000002002 | Tmprss11b
Description
transmembrane serine protease 11B [Source:RGD Symbol;Acc:1303278]
Coordinates
chr14:24103954-24105785:-
Coord C1 exon
chr14:24105526-24105785
Coord A exon
chr14:24104921-24105063
Coord C2 exon
chr14:24103954-24104115
Length
143 bp
Sequences
Splice sites
3' ss Seq
GACACGATGGTTTCCTTTAGGTA
3' ss Score
6.93
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GACAAATAATCCAAAGAACTTAACTGTTAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTATGTTGAAGAAGTTATTATCCATGAAGATTATGTTAAGGGGCAGCATCATGATGATGTCGCAATTATAAAGCTCACTGAAAAAGTTTCATTCAGGAATGACGTACATCGGGTTTGCCTCCCGGAAGCCACACAGGTTTTCCCACCAGGGGAAGGGGTCGTTGTTACAGGATGGGGATCACTTTCTTACAATG
Seq A exon
GTAAATCCCCACTGTTACTTCAGAAAGCATCCATTAAAATTATCGATACAAATGCTTGCAATTCTGAAGAAGCTTATGGAGGCAGGATAATGGACACAATGCTCTGCGCTGGTTACATGGAAGGCTATGTCGATGCTTGCCAG
Seq C2 exon
GGTGACTCTGGAGGACCCCTAGTTCATCCCAATTCTCGAGATATTTGGTACCTTGTTGGGATAGTGAGCTGGGGACATGAATGTGGCAGAGTCAACAAGCCAGGGGTCTATATGAGAGTGACTTCCTACCGTGACTGGATTGCCTCCAAGACTGGTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002002-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCCTACATGCAGCATT
R:
GGGATGAACTAGGGGTCCTCC
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]