RnoEX6043934 @ rn6
Exon Skipping
Gene
ENSRNOG00000025862 | Zp3r
Description
zona pellucida 3 receptor [Source:RGD Symbol;Acc:727846]
Coordinates
chr13:47293869-47296369:-
Coord C1 exon
chr13:47296172-47296369
Coord A exon
chr13:47294390-47294590
Coord C2 exon
chr13:47293869-47293955
Length
201 bp
Sequences
Splice sites
3' ss Seq
CATCTCTTTTAATCTTCCAGGGG
3' ss Score
9.85
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTTGTATTGATATACCAGATATTTCCTATGCTTCCTGGGACGGAAATAGGTTTCCATTAGAAAATACTGCAGTATTTGAAATTGGGACCAAATTGAAATACCGGTGCAAGCCTGGCTATCGAGCAAATGTTCACGATGTTCAGATTGTGACTTGTCAGGAAAATCTGACCTGGTCATCTCCTAGTGGATGCGAAA
Seq A exon
GGGTATGTTGCCCAACACCAAATATGGAGAAAATCAAAATCGTAAGTGAAAGGAGAGATTTCACTGGCACATGTGTCTATGCCTATGGGGACTACGTTTTCTATATTTGTAGTGAAGGTACTTACCCTATGACTACGGATGGAAGGAGTTCGTGTCAAGCAGATGGAAAGTGGGACCCTGCAATACCATCATGTGAGGCAG
Seq C2 exon
ACCCAAGCCTGCAAAACCATTTTGCTCTCACCTTCCCAAACATATCAGAAACCAACGTGACAAACAGAACCTATCTGCTTGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025862-'11-11,'11-9,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(95.5=95.5)
A:
PF0008415=Sushi=PD(3.0=2.9),PF0008415=Sushi=WD(100=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGATATTTCCTATGCTTCCTGG
R:
CAGATAGGTTCTGTTTGTCACGT
Band lengths:
260-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]