RnoEX6047150 @ rn6
Exon Skipping
Gene
ENSRNOG00000022555 | LOC497899
Description
similar to hypothetical protein 4930503F14 [Source:RGD Symbol;Acc:1561674]
Coordinates
chr10:36709018-36710622:-
Coord C1 exon
chr10:36710535-36710622
Coord A exon
chr10:36709727-36710032
Coord C2 exon
chr10:36709018-36709422
Length
306 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTCCATCTCCTGCAGGTT
3' ss Score
9.24
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
ACAGAAGCAAACCAAGGCGAAAGTTTGAGAAACACTGAAGGATCCAATGTGGGACGGAGTAGGAAGCGGGCAGGACAAAGGCCCTCAG
Seq A exon
GTTCTACTGGAAGCTCATGGACCGACTCTGAAATCAGGGTCTTTCTGCTGGAATGGGAAGTAGTTGAACAGGAAATGGGCCATCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGACGCCTCTATCAGCAGGGCCTGAGGAAGAGCTGGGAAAGCTGTTTCGACCTGCTGCTGAGCCTGCGGGATCTACACAGGACGCTCTGTAATGAGAGACCAGGGATTGAACCTTTATTTTCTCCTTATGCAGAAGCTCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
Seq C2 exon
GTCCTCTCGACGATGGGGCTGGTAACCCTTCACTTTCCATGTACCCTCAAACTCCCAGGAACCAGCCTTGGGATTATGGTGTTGCTGCTCCTTCTGCACAGCTTCAAGGGAATTCACTACCAATGATGTCACAGGAGGACTCCCTGTTTCCAAGAGGGGAGCACTGGAACCCCAGCCATTCAATGTCAGCTCCAAACTTACTTCCTAACTTTGCCCCAGGAGACCCTAGCTTCCAGCAGCCATGGCCCACCGCTGAATAACACCCAGATCCTCAATGAAGATAAGCGGCCTTTCTTTGTTTATATTCCGAAAACCTGGGATTGTGAACCTTGTGGGTGTGGGCTTATTTCTCTACCTCATAAGGGAAAAATGTGGAGTTAAATAAAGGTCCTTATAGTAACTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022555-'11-5,'11-3,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.919
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCAAACCAAGGCGAA
R:
CTGGGTGTTATTCAGCGGTGG
Band lengths:
355-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]