RnoEX6050167 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94508513-94511229:-
Coord C1 exon
chr10:94511092-94511229
Coord A exon
chr10:94510146-94510250
Coord C2 exon
chr10:94508513-94508783
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTCCTACTATACTTT
3' ss Score
0.2
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
AAAGAGGAGCAGCCAGACTATGAGGTGAACCTCTACATGTACCTCTACTTCGTCATCTTCATCATCTTCGGCTCCTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATCGACAACTTCAACCAACAGAAGAAGAAG
Seq A exon
TTTGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAACGCGATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCAATTCCCCGGCCTCAG
Seq C2 exon
AACAAGATCCAGGGCATGGTGTACGACTTCGTGACGAAGCAGGTGTTTGACATCTCCATCATGATCCTCATCTGCCTCAACATGGTTACTATGATGGTGGAGACAGATGACCAGAGCCAGCTCAAGGTGGACATCCTGTACAACATCAACATGGTCTTCATTATCATCTTCACAGGGGAGTGTGTGCTGAAGATGTTTGCCCTACGCCATTACTACTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTTGTCATCTTGTCCATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'32-27,'32-26,33-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.4=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAACCTCTTCATCGGT
R:
CATCTTCAGCACACACTCCCC
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]