DreEX6067602 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4855745-4856445:+
Coord C1 exon
chr12:4855745-4855882
Coord A exon
chr12:4855988-4856092
Coord C2 exon
chr12:4856175-4856445
Length
105 bp
Sequences
Splice sites
3' ss Seq
AATATTTGTTTTTTCTGCACTTT
3' ss Score
-0.19
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GTGGATGAGCAGCCATCATATGAAATCAACCTTTACATGTACCTTTATTTTGTTATTTTCATCATTTTTGGCTCCTTTTTTACTCTCAACCTCTTTATTGGTGTCATCATTGACAACTTCAATCAGCAAAAATCAAAG
Seq A exon
TTTGGAGGGAAAGACATTTTCATGACTGAGGAACAGAAAAAGTATTACAATGCCATGAAGAAGCTGGGTGCAAAGAAACGTCCAAAACCTATACCTCGACCATCA
Seq C2 exon
AATATTATCCAGGGTTTGGTGTTTGACTTCATATCAAAACAGTTCTTTGACATTTTTATCATGGTGCTAATCTGCCTCAACATGGTGACCATGATGATAGAGACGGATGACCAGAGTGCTGAGAAAGAATATGTCCTGTACCAGATCAATCTGGTCTTCATCGTCGTCTTCACAAGTGAATGTGTACTTAAATTATTTGCACTCAGACAGTACTTTTTCACTATTGGCTGGAACGTCTTTGATTTTGTTGTAGTCATCCTTTCTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'24-27,'24-25,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.4=68.6)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGCAGCCATCATATGA
R:
GCACTCTGGTCATCCGTCTCT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]