RnoEX6055602 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50165817-50168372:+
Coord C1 exon
chr16:50165817-50165976
Coord A exon
chr16:50167231-50167340
Coord C2 exon
chr16:50168210-50168372
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTATTTTTAATAGGAA
3' ss Score
8.29
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTTGCCCCATGGATATTTTCCAGCACTTTGCCTTTGCAGACCTGAATGTAAGCCATGTCGTCACCCCCGATGCCTTCGTGTGTCGCACCGTTTGCACCTTCCATCCCAACTGCCTCTTCTTCACATTCTACACGAATGAGTGGGAGACGGAATCACAGAG
Seq A exon
GAATGTTTGTTTTCTTAAGACATCTAAAAGTGGAAGACCAAGTCCCCCTATTATTCAAGAAAATGCTGTATCTGGATACAGTCTCTTCACCTGCAGAAAAGCTCGCCCTG
Seq C2 exon
AACCCTGCCATTTCAAGATTTACTCTGGAGTTGCCTTCGAAGGGGAAGAACTGAACGCGACCTTCGTGCAGGGAGCAGATGCGTGCCAAGAGACTTGTACAAAGACCATCCGCTGTCAGTTTTTTACTTACTCATTGCTTCCCCAAGACTGCAAGGCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'8-14,'8-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.9=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGCACTTTGCCTTTGC
R:
GTACAAGTCTCTTGGCACGCA
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]