RnoEX6058830 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53171051-53181503:-
Coord C1 exon
chr18:53181377-53181503
Coord A exon
chr18:53172244-53172396
Coord C2 exon
chr18:53171051-53171263
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTACATCTTCAGATC
3' ss Score
10.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GACATCGACGAGTGCAGCGTGGTTCCTGGAATCTGTGAGACAGGCGACTGTTCCAACACCGTGGGAAGCTATTTTTGTCTCTGTCCACGCGGCTTCGTTACCTCAACAGATGGCTCCCGGTGCATTG
Seq A exon
ATCAGAGAACTGGCACATGCTTCTCCGGCCTGGTGAATGGCCGCTGTGCTCAAGAACTCCCAGGCAGAATGGCAAAAGCTCAGTGCTGTTGCGAGCCCGGCCGTTGCTGGGGCATCGGGACCATTCCTGAGGCCTGTCCTGTCAGAGGTTCTG
Seq C2 exon
AAGAGTACCGTAGACTGTGCCTGGATGGTCTTCCAATGGGCGGTATTCCGGGGAGTTCAGTTTCTAGACCTGGAGGGTCTGGAGGCAACAGCAATGGTTATGGCCCAGGAGGAACAGGCTTCCTGCCCATCCCTGGAGGCAATGGCTTTTCTCCTGGTGTTGGAGGAGCTGGAGTAGGAGCTGGAGGGCAGGGACCCATCATCACGGGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCTGTGAGACAGGCGA
R:
AGAAAAGCCATTGCCTCCAGG
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]