GgaEX6050675 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56685889-56691674:-
Coord C1 exon
chrZ:56691549-56691674
Coord A exon
chrZ:56686879-56687031
Coord C2 exon
chrZ:56685889-56686125
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTTCTAAATTGCCTTCCAGATC
3' ss Score
9.56
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATATTGATGAATGCATCATCATCCCAGGAGTCTGTGAAGGTGGTGAATGTTCTAACACAGTGGGAAGTTATTTCTGCCTCTGCCCCCGGGGATATGTCTCATCTACAGATGGCTCCCGCTGTATCG
Seq A exon
ATCAGAGGGCAAGTACATGTTTCTCCAACTTAGTGAATGGCCGCTGTGCCCAGGAACTTCCTGGTAGGTTCACCAAAAGGCAGTGCTGCTGTGAGTCTGGCCGGTGCTGGGCCATTGGATCTGTTCCAGAGATGTGTCCTGTTAGAGGATCTG
Seq C2 exon
ATGAACACCGCAGGCTTTGTGTGGATGGTGTGCCTGCTGGAGGTGGTTCCAGAAGTGGTGGTGGGACAGGAGGAAATGGATTCCTTCCCGGTGGTAACGGCAATGGCTACAGCCCAGGAGGAGCAGGATTCATTCCTGTCCCTGGAAGTAATGGTTTCTCCCCAGGTGTAGGTGGAGCAGGGGTAGGAACAGGTGGTCAGACCCCCGCTGGAAATGGCCCAATAATAACAGGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'9-11,'9-10,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.341
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGATGGCTCCCGCTGTAT
R:
TTATTGGGCCATTTCCAGCGG
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]