DreEX6087593 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16482487-16490170:-
Coord C1 exon
chr10:16490045-16490170
Coord A exon
chr10:16485782-16485934
Coord C2 exon
chr10:16482487-16482729
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTGTATTTCAGACC
3' ss Score
10.81
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
ATGTGGATGAATGCTCCACCATTGAACGTGCGTGTGAAGCGGGACACTGCATTAATTCGGCGGGCAGTTTCTCCTGTGTGTGTCCTTCTGGATATGTGCTGTCTGCAGACCGGACTCGCTGTCTTG
Seq A exon
ACCAGCACACAGGGATCTGCTTTGCGTCAGTTGTGAATGGACGCTGTGCTCATGAAATCAGCGGACGTTTCAATAAAATCCAGTGCTGCTGTGATCGTGGCCGGTGCTGGAGTCAAAGAACAACTCATGAAATGTGTCCTGTACCAGGATCAG
Seq C2 exon
ATGAATACTTGAGGATTTGTCTGGTAGGCTCTGCTCTGAGTGGCTACAATGAGGAGGATCCTGAAATGAGCCCTCACCACCACAGCAGCTTCAGTGTTTCCCCTAATGACCAGATACTTCACCCACATAATGGCAATGGACAAATAAAACCCCAGATTCGCCAAACACCTCAAATTCTGCAGTTTCCACAGATTCCACAGATCCCAAGGCATGACAATGGATTTAAACCACAACGACCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.691
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(30.4=100),PF0764510=EGF_CA=WD(100=95.3)
A:
PF062476=Plasmod_Pvs28=FE(37.0=100),PF0068312=TB=PU(86.4=73.1)
C2:
PF062476=Plasmod_Pvs28=PD(5.1=8.5),PF0068312=TB=PD(11.4=6.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTCGGCGGGCAGTTTCTC
R:
TGAGGTGTTTGGCGAATCTGG
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]