RnoEX6058852 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53118009-53122285:-
Coord C1 exon
chr18:53122160-53122285
Coord A exon
chr18:53119051-53119173
Coord C2 exon
chr18:53118009-53118131
Length
123 bp
Sequences
Splice sites
3' ss Seq
AAAATTTTTTTTGTCTTCAGATA
3' ss Score
9.14
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACGTTGATGAGTGCGCGGAAAACATAAACCTTTGTGAGAATGGCCAGTGCCTGAACGTCCCGGGAGCTTACCGCTGCGAATGTGAGATGGGCTTCACCCCAGCCTCAGACAGCAGGTCCTGCCAAG
Seq A exon
ATATTGACGAATGCTCCTTCCAAAATATCTGCGTCTTCGGGACATGCAACAATCTGCCCGGGATGTTTCACTGCATCTGTGACGATGGTTACGAACTGGACAGAACAGGAGGCAACTGCACAG
Seq C2 exon
ATATTGACGAGTGCGCAGATCCCATAAACTGTGTCAATGGCCTATGCGTGAACACACCTGGTCGCTATGAGTGTAACTGCCCGCCTGACTTTCAGCTGAACCCCACTGGTGTGGGCTGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGAGTGCGCGGAAAAC
R:
CAACGCAGCCCACACCAG
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]