BtaEX6038486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18043087-18044427:-
Coord C1 exon
chr7:18044302-18044427
Coord A exon
chr7:18044058-18044180
Coord C2 exon
chr7:18043087-18043209
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCCACTCCTCCTCAGATG
3' ss Score
7.14
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ACAGGGACGAGTGTGCAGAGAATGTGGCCCTTTGCGAGAATGGGCAGTGTCTCAATGTCCCCGGCGGGTACCGCTGCGAGTGCGAGATGGGCTTCAGCCCCACCAAGGACCAGCATGCCTGCCAGG
Seq A exon
ATGTGGATGAGTGTGTGCTCAGGAACATCTGTGTGTTCGGGAGCTGTGAGAACCTGCCGGGGATGTTCCGCTGTATCTGCGACGAGGGCTATGAGCTGGACCGCGGTGGTGGCAACTGCACAG
Seq C2 exon
ATGTGAATGAGTGTGCAGACCCTGTGAACTGCATCAACGGCCTGTGTGTCAACACCCCCGGCAGCTACCTCTGCAACTGCCCGCAGGATTTTGAGCTGAATCCCAGCGGCGTGGGCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGAGTGTGCAGAGAATG
R:
CACGCCGCTGGGATTCAG
Band lengths:
236-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]