HsaEX0025096 @ hg38
Exon Skipping
Gene
ENSG00000142449 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr19:8109631-8111183:-
Coord C1 exon
chr19:8111058-8111183
Coord A exon
chr19:8110845-8110967
Coord C2 exon
chr19:8109631-8109753
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGACCCAGGGTCCCCGCAGATG
3' ss Score
4.72
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ACAGGGATGAATGTGCCGAGAACGTGGACCTCTGTGACAACGGGCAGTGCCTCAATGCGCCCGGCGGGTACCGCTGTGAATGTGAGATGGGCTTTGACCCCACCGAGGACCACCGGGCCTGCCAGG
Seq A exon
ATGTGGACGAGTGTGCGCAAGGGAACCTCTGTGCATTTGGGAGCTGTGAGAACCTGCCTGGAATGTTCCGCTGCATCTGCAATGGTGGCTACGAACTGGACCGAGGGGGTGGCAACTGCACAG
Seq C2 exon
ACATCAACGAGTGTGCAGACCCAGTAAACTGCATCAACGGCGTGTGCATTAACACCCCCGGCAGCTACCTCTGCAGCTGCCCCCAGGATTTTGAGCTGAACCCCAGCGGAGTGGGCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142449-'51-50,'51-48,54-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(95.3=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAATGTGCCGAGAACGT
R:
CCACTCCGCTGGGGTTCAG
Band lengths:
236-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development