RnoINT0000065 @ rn6
Intron Retention
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161881853-161884283:-
Coord C1 exon
chr4:161884150-161884283
Coord A exon
chr4:161881962-161884149
Coord C2 exon
chr4:161881853-161881961
Length
2188 bp
Sequences
Splice sites
5' ss Seq
TAAGCAGAT
5' ss Score
-11.12
3' ss Seq
GGAATGTTTTTCCAGGTAAAAGT
3' ss Score
-13.54
Exon sequences
Seq C1 exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGAGTAACACTGACAGTGAGGTCCTGCCGGCTGGAGAACAGAAAACGTATGTCTGGACCGTTACACCAAAAACACTGGGTAA
Seq A exon
GCAGATGTGCCAATCTCTCATGGACTGACTACATTTTAGCAACCTCTGTTTTCCTTAGATTTTTTCCAAAACACATAACTTTCTTTGCCATCGTATTTTAGCTGCCTTAATTCATTTCTCTATATTCAAAATTCTTATCACTCAGTTTCTTTATTTAGAGAAGGCTTTGTTTTATTTCTGTGCATGTGCCTGTTATATGTGTTTGTCACCATGCGCATGCAGGCACCCATGGAATCCAGAAGAGGGTGCTCCATTGGAACCTAAATTATAGATGGTTTTGTGTTACGTCATTAGTGCTGGAAACCAAACCCAGGTCTTCTGTAAGAGCAGCAAGTGAAACATTGAGCCCACTCTCCAGCCCTACAGCTCCTTATTATCAATACTCTGTGGAACAGAACTCCATTCATTCACATAGAAATTATAATAAGAGTAAGCCATGGCACAAACACTAATTTGTGTGATTTGTCAACTCCATACATCATACATCTCAAATGAAGATCATGTTTTATTATTATTATTATTATTATTATTATTATTAATCATTCCATACATTTACATCTCAAATGATATCCTCTTCCAGGCCATCCCTCCACAACCCCCCATCTCACCTCTGCCATCTCCCCCCTCCCCTTTGCCTCTATGAGGGTGCTCCCCCACCCACCATCTCCCACCCCACTGCTCCAGCATTCCCCTACACTGGGGCATCAAACTTCCACAGGACCAAGGGCCTTCCTACCCATTGACATCAGACAAGACCACCCTCTGCTACATATATATCTAGAACCATGGATCCCTCCCTGTACACTCCTTGGTTGGTGGAGACCATGTTTCTTTAATGCTACCCCAGTTGGTCCTCCATCACAATCATCAGTTATAATAGTCACTAAAATTTTGTTTTTTAACTAAATGTACTAAACAGGCCAGCAGATACCAAAAATACCAATCAGTGGGTGAGGATCAAATACTGAGAACTTTGCTTTAGTGCCTGGCCATTTAGAAAAGTAACTTTAGAAGTCTATGGCTGCTGATATAAAAGAAGGAGAAAGTTTAAAAGTTTAGTGAACCAGAAACTTTTTAAAACTATTTAATACTTATTAAAAATATTTTATTTCACATCCTTTATTCATTGGATTATTACATCAGTGAGAAATATGAGATTCTTTTAAAATATTCAGCTGTGATAGTGATTTACCTCAAACCGTTTTTCTGTTACACTCAAACTTTCTTAATTTTTATGCACTGTACCATCTTCAAATCTCTTACTCTGGAAAGTGAGGAAGAATTCTGCACTCACTGTTGCATTTTTGTGGTGTTCAAATGCTCTGCAAAGCAAAGAAAGAAATAAGCAAAATCCACAACAAAGAAACAGGAACAATACATTGGTTGTGTCTACAGCGCACAGATGATATTACGCCTTGCCAATAAGCTTTACCAATCCTCCAATGTCTGTAAACAGGGACCCAGCAGATCAGTTTTGATTACATACTGTGATACCACAGAAACTGAAATCAACAAATTCCTTGCCAGCACTCAGTTTATATCTGGTGGCCCTTGTGCTGTATTATATTTTACTATTTCTCTTTGATCGTAGGAAACATTAGAAACCCCAGTTATTATCGGGTGCGCTGGTGTTTCTCTTTGATCCTGGGAAACATTAAGAACCAGGAAGGTTGTTGCACACCTTTAGTCCAGCCCTCAGGAGGAAGAGGCTGGCGGATCTCTGTGAACTCTAGGCCTGGTCTATATAGTGAGTCTAGACTAGCCAGGGCTACATTGTGGCACACTATCTCAGAAAAAAAAAAGTAAGGAAGGAGAAGGGATGGGAGGGGAGAGGAGGGAAGGGGAGGGGAGGGAGGGAAGGAAGGGAACCTGCAGCTTTTTGGTGTTATATTGTTTCAATGTCATTCTGTAAACAATGTCAAAGTGGTGGTAAAAGGTTTATAAGAATGTTATCTTTCTTAAAATTTGTTAGTTCTAAGGGAGGTGACCTGACTAGCTTACTGCAGGGAATCCTGAAAGATGTAGAACAAGAACAGGAGAAGAAGCAGATAGTTTTGATCTAAACTTTCATGTGATGGTAAAGTTGACTCATCCCATTCAAGGCCCTGATTGACCAACCTGACTTACCTCCCCCTGAGGAAGGAGCCACTATCCTGTAGCTTATGCTTGGAATGTTTTTCCAGGTAAA
Seq C2 exon
AGTGGATATCACTGTAGTGGCTACATCCAAAAGAGTAGTGCCCTGCCCAAATGAATGCCATGAGGGGCAGATGTCAACTGGAAGGAACACTGTAGTTCAAAACCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247:ENSRNOT00000009557:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=8.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]