RnoINT0000068 @ rn6
Intron Retention
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161879938-161881154:-
Coord C1 exon
chr4:161881100-161881154
Coord A exon
chr4:161880022-161881099
Coord C2 exon
chr4:161879938-161880021
Length
1078 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCGGTGTTTTTCCTTTCAGGTA
3' ss Score
12.86
Exon sequences
Seq C1 exon
CAGCCTGAAGGTATTGAAAAAGAATCAACCCAAAGTTTCCTTATCTGCCCAAAAG
Seq A exon
GTAAGAGGGCTCTCCCGGCGATCACTTGGTTCTCGAGAAAGTTGTAAGCATGGCAGGTGCACTTTCTCAGCCTATGCATGAGCCACAAGACACAAGCCAGGAGCCCAGTTGCCATGTGGATACATTTTTAACTTCCCTTGCCGGCTTCACGTCCCATTTTGTCTTTGTTGTATAGTTTTTAGCAAACAAAAACGTATATTTATGAAATGTTGTCCATCTAATGAGATAAGTCCTCTCCTACCTACCTTCTCCATCTTCTATGTTTCGGTCTCTTTGTTCATATAATTGTCTCACAATCTTGGCCAATGGAAAACTCGGGATTTTGTTAGATAACACCAACACAGTGGTTGCTCTTATACTCTTGGTATGAAATAGTCTGTAGATTAACTACTGACCCTCAGTGACCTGATTTGTGGCCATCATGAGTATTGTTTGAGTCAGTTGGTGGTAGCCTGACCTTCAAGTTTACTCACCCTTTGAGCATCCCTTCTGTAAGCTATGAGTCTTGTATCTTCATATTTTTCCATGCACAATTTAAGAACCAAGCTGAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCTCTTGCCTAGCAATCACAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAAGAAAAGAAAAGAGAGAAAAAAAAGAACCAAACTGATAGAAAATTGAGACCACTGTCTAAAGCGAAGTATACATCAATTTCTGTGTGTATTGATATTTTAACTAGCTCAAAATCTGTTTAGTATTTAAATTCTTCATTACATTCATTTGTGTGTGTGCACACACAGGCATGTGTATCTGTGTGTGCTCATGTGTACGTGTATAGACCACTGGGGAATGGAAGTCAAAGGACAACTTGCAGGAGTTGCTTCTCTCCTCCTACCATTGGGTTCCAGGAATTGAACTCAGATCATCAGGCTTGGTGGGACATGCTGTCACCCTCTGCGCCATCTCACTGGCCCAAAGTCGCAATTTCATTTCACCTAATAAGTAAAACTAACTGACGGCCTGCTGCTGCTGCTGCTGTGACTTGAGGAAGGGAGTCTTTGCGGTGTTTTTCCTTTCAG
Seq C2 exon
GTACCAAAGCCTCAAAGCAAATAACTCTGGAATTGCCAAACGATGTAGTGGAAGGATCAGCCAGATCTTTTGTCACTTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247:ENSRNOT00000009557:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]